SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1723

Length: 444 nt

UniGene Fasta

>biog3_v1.0_unigene1723
TGTATATAGCTATGGTGTGTTACTTCTTGAAATCATCACTGCTCGACAGGCAGTTCAAGAGAACAAAAACCTGGTAGAATGGGCTCAAAAATACATTTTTGGAGGATTCCAATTTGTCTGAGATGGTAGATCCTAATTTGCAAAATATGTATGATTACGAACAACTTCAAAGTTTTGTCACTATTGTAAGAATGTGCACTCAAAGGGAGGGTAAATCAAGGCCTTCCATAAGGCAAGTTCTGCAACTTATGTATGATAGACTAGACATAACCTGTCCTAATTCTGCATTAATAGCTCCAGAAGAAGATGAAGATGAGGACGATAATGCCAGGAGCATGAGCAAGGGGAAGATACAGATAATGTCATTTGTAAATGGAAACAACTTCAGTGGTGAGCTAAGGTGCATAGAGTCTTCTCCCAAATCTTCAGTATCTTATTGCAGCA

Ace file of the UniGene biog3_v1.0_unigene1723

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6785	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] dbj\|BAB02454.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAU94380.1\| At3g19300 [Arabidopsis thaliana] gb\|AAV59270.1\| At3g19300 [Arabidopsis thaliana] gb\|AEE76221.1\| protein kinase family protei	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	probable receptor-like protein kinase at1g49730-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 86 aas, putative chimeric sequence, your sequence is shorter than subject: 40 - 347

Fln protein: VYSYGVLLLEIITARQAVQENKNLVEWAQKYIFGGFQFV*

Protein Length: 41

Fln nts: TGTATATAGCTATGGTGTGTTACTTCTTGAAATCATCACTGCTCGACAGGCAGTTCAAGAGAACAAAAACCTGGTAGAATGGGCTCAAAAATACATTTTTGGAGGATTCCAATTTGTCTGA___GATGGTAGATCCTAATTTGCAAAATATGTATGATTACGAACAACTTCAAAGTTTTGTCACTATTGTAAGAATGTGCACTCAAAGGGAGGGTAAATCAAGGCCTTCCATAAGGCAAGTTCTGCAACTTATGTATGATAGACTAGACATAACCTGTCCTAATTCTGCATTAATAGCTCCAGAAGAAGATGAAGATGAGGACGATAATGCCAGGAGCATGAGCAAGGGGAAGATACAGATAATGTCATTTGTAAATGGAAACAACTTCAGTGGTGAGCTAAGGTGCATAGAGTCTTCTCCCAAATCTTCAGTATCTTATTGCAGCA

Fln Alignment:

Contig1723___VYSYGVLLLEIITARQAVQ-ENKNLVEWAQKYIFGG
D5A9D1_________________VFSFGVLLLEIISGRRPIDASEQNILSWAKPLMESG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
276	14	85			0.993533
350		20	80		0.995493
353	80			20	0.995493
378	75	25			0.996473
380		75		25	0.996473
381	75			25	0.996473
389	25		75		0.996473
391			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain