SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1717

Length: 2405 nt

UniGene Fasta

>biog3_v1.0_unigene1717
AATGTAGAACGACGAAGGTTCTGGAATCATCTGGTAATTAGGGTTAGGGTTAGAGGTCTGCCTCCTGAACCTATTTATGGTATTCAAGGTCACCATTGAATACCAAGTTAGAAGGGTAGAGACTTTGCTGCTCTGCCTTTGAAGTATCCGTTGCATCTCTGTGTTATTTAATCGTTCTTTGAATTTGGGGGTAATATCTTCTGTAGAGTTTTGAAATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGGAAGGCGTTTCAGTGACGCTACTGTTCAGAGTGACATCAAGATGTGGCCTTTTAAGTTAACACCGGGGCCTGCTGACAAGCCTATGATTGTTGTTAATTACAAAGGCGAGGAGAAGCAGTTTGCTGCAGAGGAGATTTCATCCATGGTGTTAATGAAGATGAGGGAGATTGCAGAGGCTTACCTTGGTGTCACAATAAAGAATGCCGTTGTCACTGTTCCTGCATATTTCAACGACTCCCAGAGGCAGGCTACCAAGGATGCTGGAGTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGATTTGGGGGGTGGAACATTTGATGTTTCGCTTTTAACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGGAATTTAAAAGGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTAGAGCTAGGTTCGAAGAGTTGAATATGGATCTATTCAGAAAGTGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGCTAAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGGTTCAAGACCTGTTACTTCTTGACGTAACTCCTCTCTCCCTTGGTCTGGAGACAGCAGGCGGTGTTATGACTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTTTCGGCTGAGGACAAGACCACTGGACAGAAGAACAAGATTACAATCACTAATGACAAGGGTAGGTTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCACAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTATAACATGAGGAACACGATCAAGGATGAGAAAATTGCTGCCAAGGTGGATCCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAATCTGGCTCTTTCTCAAATGCATATGATATTACTGTATTTTCTGTCGTAAGAATTATATTATTATTAGCATAATTTTGATGTTGAAATTTATATTTAATGATGCAATTGCCGGCTATTATGGCGGCGATTTTATGTTAATCTTGAACCTCAATGCAAGAGATGGCCATTGCGGTGATTTCATCACGTACTTATGGTGTTGGAATATTTATTTGATGTCGCAATCAAGACATT

Ace file of the UniGene biog3_v1.0_unigene1717

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15808	211/1007
SustainPine v2.0	sp_v2.0_unigene25812	721/1007
SustainPine v2.0	sp_v2.0_unigene62311	54/1007
SustainPine v2.0	sp_v2.0_unigene81303	1/1007
SustainPine v2.0	sp_v2.0_unigene82244	1/1007
SustainPine v2.0	sp_v2.0_unigene82385	2/1007
SustainPine v2.0	sp_v2.0_unigene82495	2/1007
SustainPine v2.0	sp_v2.0_unigene82496	2/1007
SustainPine v2.0	sp_v2.0_unigene82553	1/1007
SustainPine v2.0	sp_v2.0_unigene82716	3/1007
SustainPine v2.0	sp_v2.0_unigene82768	2/1007

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 70 n=3 Tax=Embryophyta RepID=C9WCK6_9MARC	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	heat shock protein 70	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg:

Fln protein: MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFKLTPGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDVPGGGFGGVPPEGGPSSGGGAGPKIEEVD*

Protein Length: 654

Fln nts: AATGTAGAACGACGAAGGTTCTGGAATCATCTGGTAATTAGGGTTAGGGTTAGAGGTCTGCCTCCTGAACCTATTTATGGTATTCAAGGTCACCATTGAATACCAAGTTAGAAGGGTAGAGACTTTGCTGCTCTGCCTTTGAAGTATCCGTTGCATCTCTGTGTTATTTAATCGTTCTTTGAATTTGGGGGTAATATCTTCTGTAGAGTTTTGAA_-_ATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGGAAGGCGTTTCAGTGACGCTACTGTTCAGAGTGACATCAAGATGTGGCCTTTTAAGTTAACACCGGGGCCTGCTGACAAGCCTATGATTGTTGTTAATTACAAAGGCGAGGAGAAGCAGTTTGCTGCAGAGGAGATTTCATCCATGGTGTTAATGAAGATGAGGGAGATTGCAGAGGCTTACCTTGGTGTCACAATAAAGAATGCCGTTGTCACTGTTCCTGCATATTTCAACGACTCCCAGAGGCAGGCTACCAAGGATGCTGGAGTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGATTTGGGGGGTGGAACATTTGATGTTTCGCTTTTAACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGGAATTTAAAAGGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTAGAGCTAGGTTCGAAGAGTTGAATATGGATCTATTCAGAAAGTGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGCTAAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGGTTCAAGACCTGTTACTTCTTGACGTAACTCCTCTCTCCCTTGGTCTGGAGACAGCAGGCGGTGTTATGACTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTTTCGGCTGAGGACAAGACCACTGGACAGAAGAACAAGATTACAATCACTAATGACAAGGGTAGGTTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCACAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTATAACATGAGGAACACGATCAAGGATGAGAAAATTGCTGCCAAGGTGGATCCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAA___TCTGGCTCTTTCTCAAATGCATATGATATTACTGTATTTTCTGTCGTAAGAATTATATTATTATTAGCATAATTTTGATGTTGAAATTTATATTTAATGATGCAATTGCCGGCTATTATGGCGGCGATTTTATGTTAATCTTGAACCTCAATGCAAGAGATGGCCATTGCGGTGATTTCATCACGTACTTATGGTGTTGGAATATTTATTTGATGTCGCAATCAAGACATT

Fln Alignment:

Contig1717___KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFKLTPGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQ
B8LRY5_________________KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQ

SNPs (tot: 108)

Position	A %	C %	G %	T %	Probability
235		33	66		0.997452
246	12		87		0.992554
247	12		87		0.992554
249	87		12		0.992554
265		95		4	0.997218
360	4		95		0.996599
363	95			4	0.99692
399	4		92	2	0.98868
400		5		95	0.997749
401	5	95			0.997749
402			95	5	0.997749
403		95		5	0.997749
589	9	90			0.999842
593			90	9	0.999842
740	90			10	0.90298
741	90			10	0.90298
781	27			72	1.0
782		27	72		1.0
783	27		72		1.0
784	72			27	1.0
785		72		27	1.0
813	80			20	0.999996
814	80		20		0.999996
1120	12	87			0.992554
1121	87	12			0.992554
1154	14		85		0.993533
1155		14	85		0.993533
1158		83		16	0.994512
1326	16	83			0.994512
1327	16	83			0.994512
1328		83		16	0.994512
1362	12		87		0.999964
1363	12	87			0.999964
1364		87		12	0.999964
1460	4			95	0.996252
1563		5	94		0.999996
1565	94			5	0.999995
1566			95	4	0.999983
1659		0	96	2	0.993013
1661			97	2	0.999381
1711	97			2	0.999574
1727	0	0	95	2	0.987887
1733		3	96		0.999836
1740	96		0	2	0.99597
1754			97	2	0.914425
1756	4		95		1.0
1757		2		97	0.930363
1758	97			2	0.936149
1760	1		90	2	1.0
1763		2	97		0.949185
1765			97	2	0.951554
1766		97		2	0.951554
1781			97	2	0.964186
1782	97			2	0.964186
1794	2		97		0.975753
1795	97	2			0.975753
1797			97	2	0.977151
1798		97		2	0.977151
1821	3		96		0.999874
1822	96			3	0.999874
1823	96			3	0.999874
1829		95		4	1.0
1830	97			2	0.956062
1832			97	2	0.960269
1835	2		97		0.969538
1839			97	2	0.977151
1844			96	3	0.986325
1848	96			3	0.99245
1862		4	95		0.994598
1864	95			4	0.994598
1865		95		4	0.994598
1880	2		92	4	0.98868
1883	4		90	4	0.960255
1884	95			5	0.997749
1885	94			5	0.997984
1896	6		90	3	0.997544
1899			93	6	0.999453
1927		91		8	0.999766
1947	9		90		0.999872
1948	90			9	0.999872
2095	8		87		0.999414
2096		8		91	0.999766
2097	8		91		0.999766
2098			87	12	1.0
2099		91		8	0.999766
2214	6			93	0.99903
2217			93	6	0.99903
2233	5			94	0.998744
2235	2	2		85	0.999999
2236		8		85	0.999999
2239	5			94	0.998894
2245	93			6	0.999364
2248		7		92	0.999532
2307		8		91	0.999807
2308	8		91		0.999807
2327	10		90		0.999898
2330	90			10	0.999898
2331			90	10	0.999898
2354	90		10		0.90298
2355	10			90	0.90298
2356	14	28		14	1.0
2357	83		16		0.994512
2358		80		20	0.995493
2359	20		60	20	0.99255
2360		25		75	0.996473
2362		75		25	0.996473
2386	33		66		0.997452
2390			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain