SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1693

Length: 469 nt

UniGene Fasta

>biog3_v1.0_unigene1693
ATCAGGGCCGGGGTGCGTCCATGGCCTTGCGGGACTTAGCAACGCTATGATCAATACGTGGCCCATGATCATGATATCAGGCTCCTGCGACCAGGCGGACTTCGGGAAGGGCGATTTCCAGGAGCTCGACCAGCTGGAGGCTTCTGCCTGATACCCACGAGCTCTCTGCAACCGCAGCCCGGTCGCTGGCAATCGGGCAGTGCGATGTTGCGTTAATTGTGGGGGCGAGGCTTAATTGGATGCTGCATTTTGGAGAGCCCCCGAGATGGTCTAAGGATGTGAAATTTATCCTGGTGGATGTCTCAGAGGAGGAGATGAAGGTGAGGAAGCCTTCTGTGGGGCTCATTGGGGATGCCAGGGTTGTTGTGCAACAGATTCTCAAGGAGGCTAAGGATGAACCGTTTAGCCTAGGAAGGAGTCATCCATGGGTGGAAAGAATTGTTGAGAAGGCCAAGGAGAATGTGAAAAA

Ace file of the UniGene biog3_v1.0_unigene1693

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene765	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	2-hydroxyacyl-CoA lyase [Arabidopsis thaliana] sp\|Q9LF46.1\|HACL_ARATH RecName: Full=2-hydroxyacyl-CoA lyase; AltName: Full=2-hydroxyphytanoyl-CoA lyase; Short=2-HPCL; AltName: Full=Oxalyl-CoA decarboxylase emb\|CAC01733.1\| 2-hydroxyphytanoyl-CoA lyase-like	-	-	71%
FL-Next	sp=2-hydroxyacyl-CoA lyase; Arabidopsis thaliana (Mouse-ear cress).	-	-	85%
Blast2go	2-hydroxyacyl- lyase-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxalyl-CoA decarboxylase.	EC:4.1.1.8	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Pyruvate decarboxylase.	EC:4.1.1.1	-	84%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	84%
Blast2go	oxalyl-CoA decarboxylase activity	GO:0008949	Molecular Function	84%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	84%
Blast2go	transferase activity	GO:0016740	Molecular Function	84%
Blast2go	thiamine pyrophosphate binding	GO:0030976	Molecular Function	84%
Blast2go	pyruvate decarboxylase activity	GO:0004737	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LF46

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 207 aas, your sequence is shorter than subject: 156 - 572

Fln protein: SGPGCVHGLAGLSNAMINTWPMIMISGSCDQADFGKGDFQELDQLExxLPDTHELSATAARSLAIGQCDVALIVGARLNWMLHFGEPPRWSKDVKFILVDVSEEEMKVRKPSVGLIGDARVVVQQILKEAKDEPFSLGRSHPWVERIVEKAKENVK

Protein Length: 157

Fln nts: ATCAGGGCCGGGGTGCGTCCATGGCCTTGCGGGACTTAGCAACGCTATGATCAATACGTGGCCCATGATCATGATATCAGGCTCCTGCGACCAGGCGGACTTCGGGAAGGGCGATTTCCAGGAGCTCGACCAGCTGGAGxxxxxxCTGCCTGATACCCACGAGCTCTCTGCAACCGCAGCCCGGTCGCTGGCAATCGGGCAGTGCGATGTTGCGTTAATTGTGGGGGCGAGGCTTAATTGGATGCTGCATTTTGGAGAGCCCCCGAGATGGTCTAAGGATGTGAAATTTATCCTGGTGGATGTCTCAGAGGAGGAGATGAAGGTGAGGAAGCCTTCTGTGGGGCTCATTGGGGATGCCAGGGTTGTTGTGCAACAGATTCTCAAGGAGGCTAAGGATGAACCGTTTAGCCTAGGAAGGAGTCATCCATGGGTGGAAAGAATTGTTGAGAAGGCCAAGGAGAATGTGAAAAA

Fln Alignment:

Contig1693___SGPGCVHGLAGLSNAMINTWPMIMISGSCDQADFGKGDFQELDQLEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLPDTHELSATAARSLAIGQCDVALIVGARLNWMLHFGEPPRWSKDVKFILVDVSEEEMKVRKPSVGLIGDARVVVQQILKEAKDEPFSLGRSHPWVERIVEKAKEN
Q9LF46_________________SGPGCVHGLAGLSNAWVNTWPMVMISGSCDQRDVGRGDFQELDQIEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVSEEEIELRKPHLGIVGDAKTVIGLLNREIKDDPFCLGKSNSWVESISKKAKEN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
240	20		80		0.995493
244		80		20	0.995493
337	33		66		0.997452
338		33		66	0.997452
339	33		66		0.997452
340			66	33	0.997452
341			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain