SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1633

Length: 708 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1633 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5547	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana] dbj\|BAA97132.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAC43259.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63407.1\| At5g54100 [Arabidopsis thaliana] gb\|A	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	band 7 family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Band 7 protein	IPR001107	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Stomatin	IPR001972	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
223	16		83		0.994512
298			66	33	1.0
303	16			83	0.994512
306		83		16	0.994512
317		20	80		0.995493
320			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain