SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1624

Length: 773 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1624 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7192	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	SPFH domain-containing protein 2, putative n=1 Tax=Ricinus communis RepID=B9REE7_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	spfh domain-containing protein 2	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
223		16		83	0.994512
228	16		83		0.994512
229	83	16			0.994512
308		25		75	0.996473
741	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain