SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1610

Length: 1018 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1610

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6420	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAN13056.1\| unknown protein [Arabidopsis thaliana] gb\|AEE84462.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	70%
Blast2go	guanine nucleotide-binding protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	78%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR013596	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9PCB3

Fln msg:

Fln protein: MLASDPASCVLAATTRDHPVHLWDSVSGQLRGTYRAYDSMDEITTAFSVAFNPSGTKLFCGYNKALRVFDIHRPGRDFEQYSTLTSTKDGQTGIISCISFSPVYNGLLAAGSYNRTTALYAEENAELLFVLHGQEGGVTQVLFSRDGNYLYTGGRKDPYILCWDVRNTTGILYKFYRSAENTNQRIAFDIEPYGRHLGTGGQDGQVNIYDLQTGEWVTNFRAAYDTVNGFCFHPSLPLAVSSSGHRRFCIPGDDEESLKLRVEENYASVWSFSCTWVGGHGSDVDHQDNNKEEAPEYVNVQGESKDADSTKTEDVIEVSVDFDNTKEQER*

Protein Length: 332

Fln nts: CAT_-_ATGCTTGCTTCAGACCCAGCTAGTTGTGTTTTAGCAGCTACAACTCGCGACCATCCAGTTCATCTTTGGGATTCTGTTTCTGGTCAACTTCGTGGTACGTATCGGGCATATGACTCTATGGATGAAATAACTACAGCATTTTCTGTTGCATTTAATCCTTCAGGAACAAAATTATTTTGTGGATACAACAAAGCTCTCAGAGTTTTTGACATACATCGCCCAGGTCGTGATTTTGAGCAGTACTCAACACTTACTAGTACAAAAGATGGGCAAACAGGTATTATATCGTGTATCTCTTTTAGTCCTGTGTATAATGGGTTGCTTGCTGCTGGATCCTACAATCGAACTACTGCATTATATGCTGAGGAAAATGCAGAACTTTTATTTGTCCTACATGGCCAAGAAGGTGGTGTTACTCAGGTTCTTTTTTCAAGGGATGGAAACTATCTCTACACTGGGGGACGTAAGGATCCTTACATTTTGTGCTGGGATGTGCGAAATACAACTGGGATTTTGTACAAGTTCTACAGGTCTGCAGAGAATACTAATCAGCGAATAGCCTTTGATATTGAGCCTTATGGACGACATTTAGGTACTGGTGGGCAGGATGGCCAAGTGAATATATATGACTTGCAAACTGGAGAATGGGTTACAAACTTTAGGGCCGCTTATGACACTGTGAATGGATTTTGCTTTCATCCATCCCTTCCTTTAGCTGTGTCTTCTTCTGGGCATCGCCGATTTTGCATACCGGGTGATGATGAAGAGAGTTTAAAATTACGTGTTGAGGAGAACTATGCTTCAGTATGGAGTTTCTCGTGTACATGGGTTGGAGGACATGGGTCTGATGTTGACCATCAAGATAATAACAAAGAAGAAGCTCCAGAGTATGTGAATGTTCAAGGTGAAAGTAAAGATGCAGATTCAACAAAAACTGAGGATGTTATTGAAGTTTCAGTTGATTTTGATAACACAAAGGAACAAGAGAGATAA___GAGAATTGATGCTTGAGCATCA

Fln Alignment:

Contig1610___MLASDPASCVLAATTRDHPVHLWDSVSGQLRGTYRAYDSMDEITTAFSVAFNPSGTKLFCGYNKALRVFDIHRPGRDFEQYSTLTSTKDGQTGIISCISFSPVYNGLLAAGSYNRTTALYAEENAELLFVLHGQEGGVTQVLFSRDGNYLYTGGRKDPYILCWDVRNTTGILYKFYRSAENTNQRIAFDIEPYGRHLGTGGQDGQVNIYDLQTGEWVTNFRAAYDTVNGFCFHPSLPLAVSSSGHRRFCIPGDDEESLKLRVEENYASVWSFSC
A9PCB3_________________MTASDPVSCVFATTTRDHPIHLWDATSGLLRCTYRAYDAVDEITAAISIAFNPAGTKIFAGYNKSIRVFDIHRPGRDFAQYSTIQGNKEGQTGIISAVAFSPTHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDIRKAVEVVYKLYRSSEYTNQRIFFDIEPLGRHLATGGQDGLVHIYDLQNGQWISGFQAATDTVNGFAFHPFLPMAVSSSGHRRFKVPDGCDENLPLTGYENCASVWNFSC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
105	33			66	0.997452
106	33	66			0.997452
107			66	33	0.997452
109			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain