SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1607

Length: 507 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1607
AATGTATTGGTTTCACAACCTGTTATTGAAGGCTTAGAAGAAGTTGAAGAGGAGGAGGCTGGATTAGTCATGCATGGTGTGCAGAGAAGGATATAGCTTAAGGCCCACAGATATGCTGGGGGCTTACTCTTTTAGTAAACGTGTAAATTTGCCTCTTGGAACCACAAGTCATGCTCGTGGGGAATGGGTGTATACAACTGTTAGTCATTTTAATATTATACATTTTCAGTGCCATCAAGAGGCCAAGCGAGCAGATGCTTCACTAAAGAACCCTAAGAAGGAATGGGAGGGAGCAGCCTTACGCAACAATGAAACTCTCTGTAACAGTCTTTTTCCTTTGAGGGGACCTTCTGTGCCTATTCCCCAATATGCACGCTGTGTTGATCAATTTTGGGATTGTTTGAATGCCCTTGGGCGAGCTGATGGGGGTCGTCTCCGATTGCTTACTTATGATATTGTGCTGATGCTGGCTCGTTTGCAACTGGAGCATCATTCAGCACTGATAGC

Ace file of the UniGene biog3_v1.0_unigene1607 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1316	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SIX2_RICCO	-	-	58%
FL-Next	sp=Auxin transport protein BIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	e3 ubiquitin-protein ligase ubr4	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	auxin polar transport	GO:0009926	Biological Process	77%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	77%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	77%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	77%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SRU2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 168 - 5098

Fln protein: MYWFHNLLLKA*KKLKRRRLD*SCMVCREGYSLRPTDMLGAYSFSKRVNLPLGTTSHARGEWVYTTVSHFNIIHFQCHQEAKRADASLKNPKKEWEGAALRNNETLCNSLFPLRGPSVPIPQYARCVDQFWDCLNALGRADGGRLRLLTYDIVLMLARLQLEHHSALI

Protein Length: 169

Fln nts: AATGTATTGGTTTCACAACCTGTTATTGAAGGCTTAGAAGAAGTTGAAGAGGAGGAGGCTGGATTAGTCATGCATGGTGTGCAGAGAAGGATATAGCTTAAGGCCCACAGATATGCTGGGGGCTTACTCTTTTAGTAAACGTGTAAATTTGCCTCTTGGAACCACAAGTCATGCTCGTGGGGAATGGGTGTATACAACTGTTAGTCATTTTAATATTATACATTTTCAGTGCCATCAAGAGGCCAAGCGAGCAGATGCTTCACTAAAGAACCCTAAGAAGGAATGGGAGGGAGCAGCCTTACGCAACAATGAAACTCTCTGTAACAGTCTTTTTCCTTTGAGGGGACCTTCTGTGCCTATTCCCCAATATGCACGCTGTGTTGATCAATTTTGGGATTGTTTGAATGCCCTTGGGCGAGCTGATGGGGGTCGTCTCCGATTGCTTACTTATGATATTGTGCTGATGCTGGCTCGTTTGCAACTGGAGCATCATTCAGCACTGATAGC

Fln Alignment:

Contig1607___SCMVCREGYSLRPTDMLGAYSFSKRVNLPLGTTSHARGEWVYTTVSHFNIIHFQCHQEAKRADASLKNPKKEWEGAALRNNETLCNSLFPLRGPSVPIPQYARCVDQFWDCXXXXXXXXXXXXXXLTYDIVLMLAR
Q9SRU2_________________ACMVCREGYKLRPSDLLGVYSYSKRVNLGVGNSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGAMLRNNESLCNSLFPVKGPSVPLAQYLRYVDQYWDNLNALGRADGSRLRLLTYDIVLMLAR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
241	16			83	0.994512
243	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain