SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1592

Length: 576 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1592
AATGTGGCTGGGTGGCCTGCTTGGTTGTCTGCCGTTGCTGGAGAAGCAATTAAAGGCTGGATTCCACGTAGAGCTGACACCTTTGAGAAACTCGATAAGATTGGGCAAGGGACATATAGCAACGTTTACAAGGCTCGAGATATAGATACTGGAAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTGGAACCTGAAAGTGTAAAGTTTATGGCAAGGGAGATTTTGGTCTTGCGACGGCTTGATCATCCTAATGTGGTCAAACTGGAGGGATTGGTAACCTCGAGAATGTCTTGCAGTTTGTATCTTGTATTTGAATACATGGAGCATGATCTTGCAGGTCTTGCAGCTTCTCCAGGAAGCACTTTTACTGAACCTCAGGTAAAATGCTATTTACATCAGTTGCTTTCAGGGCTTGAACACTGTCACAGCAGAGGTGTCTTGCATCGTGATATTAAGGGTTCCAATCTGCTTCTTGACAATGGAGGCATATTGAAAATTGCTGATTTTGGTTTGGCTACATTTTACTAATCCTGATCAGAAGCAACCTATGACTAGTCGTGTAGTTACCCT

Ace file of the UniGene biog3_v1.0_unigene1592 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene115	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj\|BAD30726.1\| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	probable serine threonine-protein kinase at1g54610-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Gonadotropin-releasing hormone	IPR002012	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Xylan biosynthesis protein IRX15/IRX15L	IPR006514	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 372 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 178 - 575

Fln protein: NVAGWPAWLSAVAGEAIKGWIPRRADTFEKLDKIGQGTYSNVYKARDIDTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGSTFTEPQVKCYLHQLLSGLEHCHSRGVLHRDIKGSNLLLDNGGILKIADFGLATFY*

Protein Length: 179

Fln nts: A_-_ATGTGGCTGGGTGGCCTGCTTGGTTGTCTGCCGTTGCTGGAGAAGCAATTAAAGGCTGGATTCCACGTAGAGCTGACACCTTTGAGAAACTCGATAAGATTGGGCAAGGGACATATAGCAACGTTTACAAGGCTCGAGATATAGATACTGGAAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTGGAACCTGAAAGTGTAAAGTTTATGGCAAGGGAGATTTTGGTCTTGCGACGGCTTGATCATCCTAATGTGGTCAAACTGGAGGGATTGGTAACCTCGAGAATGTCTTGCAGTTTGTATCTTGTATTTGAATACATGGAGCATGATCTTGCAGGTCTTGCAGCTTCTCCAGGAAGCACTTTTACTGAACCTCAGGTAAAATGCTATTTACATCAGTTGCTTTCAGGGCTTGAACACTGTCACAGCAGAGGTGTCTTGCATCGTGATATTAAGGGTTCCAATCTGCTTCTTGACAATGGAGGCATATTGAAAATTGCTGATTTTGGTTTGGCTACATTTTACTAATCCTGATCAGAAGCAACCTATGACTAGTCGTGTAGTTACCCT

Fln Alignment:

Contig1592___WIPRRADTFEKLDKIGQGTYSNVYKARDIDTGKIVALKKVRFDNLEPESVKFMA-REILVLRRLDHPNVVKLEGLVTS--------------RMSCSLYLVFEYMEHDLAGLAASPGSTFTEPQVKCYLHQLLSGLEHCHSRGVLHRDIKGSNLLLDNGGILKIADFGLA
A9NXN0_________________WGSRSVSCFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDN-EREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain