SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1540

Length: 1022 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1540

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17387	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	omega-amidase [Arabidopsis thaliana] gb\|AAL91613.1\| AT5g12040/F14F18_210 [Arabidopsis thaliana] gb\|AAM10335.1\| AT5g12040/F14F18_210 [Arabidopsis thaliana] gb\|AED91754.1\| omega-amidase [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	omega-amidase nit2-like	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV1

Fln msg: your sequence is shorter than subject: 285 - 358

Fln protein: FKIALCQLSVTENKERNIAHARAAVEAATDNGAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCVFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAVDNQLYVASCSPARDINAGYVAWGHSTLVAPFGEIVATTDHEEATIIADIDYSQIEERRLNMPLEKQRHGDLYQLVDVNRLDKEKH*

Protein Length: 286

Fln nts: GTTCAAAATCGCCTTGTGCCAGTTGTCTGTGACGGAGAACAAGGAGAGGAATATAGCGCATGCTCGTGCCGCTGTCGAGGCTGCAACTGATAATGGCGCTCAGCTTGTAGTGTTGCCGGAGATATGGAATGGTCCATATTCAAATGCTAGTTTTCCAGTATATGCTGAAGACATAGATGCTGGTGGAAGTGCATCTCCTTCAACATCCATGCTTTCTGAAGTTGCTCGTAGCAAAGGGATCACAATAGTTGGTGGATCAATTTCGGAACGCAGTGGTGATCACCTCTACAACACATGTTGTGTATTTGGAAAAGATGGAGAACTGAAAGCTAAACACAGAAAGATACATCTTTTTGACATTGATATTCCTGGAAAGATTTCCTTTATGGAATCCAAAACACTTACAGCTGGCAATACCCCGACAATCGTAGACACAGATGTAGGGCGTATTGGGATTGGAATTTGTTATGATATCCGCTTCCAAGAATTGGCTATGCTGTATGCAGCAAGAGGTGCACACTTAATATGCTATCCTGGAGCTTTCAACATGACTACTGGTCCGCTTCATTGGGAGCTACTACAGAGAGCCAGGGCAGTCGATAATCAGCTGTATGTTGCTTCATGTTCACCTGCTCGTGACATAAATGCAGGCTATGTTGCCTGGGGCCACTCCACTCTCGTTGCACCGTTTGGAGAAATTGTTGCAACAACGGACCATGAAGAAGCAACAATCATAGCAGATATTGACTATTCCCAAATAGAGGAAAGAAGGTTGAATATGCCACTTGAAAAGCAGCGACACGGTGATTTGTATCAACTCGTTGACGTTAACAGATTGGACAAAGAAAAGCATTGA___TCGCGTTTTACTCATTGATACTCAAAAAACATTGATCGTGTTTTTAATATTCGCAAGGGTTATTGTACAACTAATTTTATCTACATTGATTACAGTACTTGCCAGTTTCATCCAATATAAACGACTATGAATGCAATGCATTAGAATTTCATGGCCTCAAGACATT

Fln Alignment:

Contig1540___FKIALCQLSVTENKERNIAHARAAVEAATDNGAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCVFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAVDNQLYVASCSPARDINAGYVAWGHSTLVAPFGEIVATTDHEEATIIADIDYSQIEERRLNMPLEKQRHGDLYQLVDVNRLDKEKH
A9NNV1_________________FKIALCQLSVTENKERNIAHARDAIEAAADNGAQLVVLPEIWNGPYSNASFPVYAEDIDAGGSASPSTSMLSEVARSKGITIVGGSISERSGDHLYNTCCIFGKDGELKAKHRKIHLFDIDIPGKISFMESKTLTAGNTPTIVDTDVGRIGIGICYDIRFQELAMLYAARGAHLICYPGAFNMTTGPLHWELLQRARAIDNQLYVATCSPARDINAGYVAWGHSTLVAPFGEIVATTEHEEATVIADIDYSRIEERRMNMPLEKQRHGDLYQLVDVSRLDTAKH

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
791	14			85	0.993533
792		14	85		0.993533
794	85			14	0.993533
795	85			14	0.993533
858	20			80	0.995493
859		20	80		0.995493
862		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain