SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1516

Length: 1514 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1516 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17013	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	putative VAMP-associated protein [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	vesicle-associated protein 1-2-like	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Vesicle-associated membrane protein	IPR016763	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNK2

Fln msg:

Fln protein: MTNEIVTIQPGELTFLFELKKQSSCSLQLVNNMDFDVAFKVKTTSPKKYCVRPNTGVIPPQSTCDVTVTMQAQKEIPPDMQCKDKFLVQSVMVPAGTTAKDITPDMFNKESDKVYEEHKLRVVYVSPVQTTSPEPQPLEDGLAPKESVDNRSVSSVDNVVLKDPSELKAKLSEAMAAISHLTEERNAVLRQKQQIQEEMAVVKRMHPGRPKMGFSFLFVCFIGLVGIVVGYFFHS*

Protein Length: 237

Fln nts: GACTGCGAATTCCCGAACCATTTCGCCTGCTACTTCCCTTGCTTTTGTTTGAAATGCAGATGAAATAAACGCTTTATTCTCTCCGCTTTCTTTTAATTTCTCCATTTTATTATTGATAAGGGCTTTGTTCAGACCCTTAAATCTGTGAAGGGGCGGACAAGCGGAGGAGGATCCGGCCATAATATTGAGATACATGCGAAGGAGTATACTGTCGGCCAGTTGTTGATTTTGCTTCCAGGCTTTATTTGGATCGTTGATTAAACTTTGGTTATTGGCAGAATCTTCCTCCTCCTTGGTCAAGGTTTGTGAATTGATCATTCTGTGAACTCGATATTATTTATATTGTCAGTGGCCAACTTCAAGGATACAGGTTACCTGGCATAAAACTAGTC_-_ATGACTAACGAAATTGTCACAATTCAGCCGGGAGAACTTACGTTTCTCTTTGAATTGAAGAAGCAAAGTTCATGCTCTCTTCAGCTAGTCAACAACATGGACTTCGATGTTGCATTTAAGGTGAAAACTACATCTCCAAAGAAGTACTGTGTACGACCCAATACAGGCGTCATCCCACCTCAGTCTACATGTGATGTGACAGTCACCATGCAAGCGCAAAAAGAGATACCGCCTGATATGCAATGTAAGGACAAATTTCTTGTGCAGAGTGTTATGGTCCCTGCTGGGACAACTGCTAAAGATATTACTCCAGATATGTTCAACAAGGAATCTGACAAGGTATATGAGGAACACAAATTGAGGGTGGTGTATGTATCTCCAGTCCAGACCACTTCTCCTGAACCACAACCATTAGAGGATGGATTAGCACCAAAGGAATCTGTCGACAATCGGAGTGTTTCCTCAGTGGATAATGTGGTACTGAAAGATCCCAGTGAGTTGAAGGCAAAGCTCTCTGAGGCTATGGCAGCAATATCACACTTAACAGAAGAGAGGAATGCTGTTCTTCGACAAAAGCAACAAATTCAAGAAGAAATGGCAGTTGTGAAGAGGATGCACCCGGGAAGACCTAAAATGGGTTTCTCATTTTTGTTTGTTTGCTTTATTGGTCTTGTGGGCATTGTGGTTGGGTACTTCTTCCATTCATAG___AATTTCTGAAATGACTGCAGTACTTGAAATAAGTACACTATCTGAGATGAGGAGCTTAAGTTTGCCAGATTTATGCAGAGCATGTAAGGAAGCATCACGAATTTCATGGAAAAATCCATGGCTGCAGTATTTGTGTCTGCAAACTCTGCATGAGATTAATATTTTCCACTTATCTGGTGATCTTTGTGGGCCGATTGTTGTCTGTTTTACTGGATCTGCGGTAAAGGTCGACTTTTGATTGGTTGAACAAATTTAGTGCTTTAATAGGTGTTTTGGAACAGCAAGCCAAGGTTGAAATCCCCGTGTCTACAGATAGCCCAGCTTCAAACTGTGTTGTGTAGTGAAATCAAGTTACATACCCTTGTACTAGTGGAGTTTATTCTATAATCTTGAATGATTCTTTTGAAGCACATT

Fln Alignment:

Contig1516___MTNEIVTIQPGELTFLFELKKQSSCSLQLVNNMDFDVAFKVKTTSPKKYCVRPNTGVIPPQSTCDVTVTMQAQKEIPPDMQCKDKFLVQSVMVPAGTTAKDITPDMFNKESDKVYEEHKLRVVYVSPVQTTSPEPQPLEDGLAPKE--XXXXXXXXXXXXXVLKDPSELKAKLSEAMAAISHLTEERNAVLRQKQQIQEEMAVVKRMHPGRPKMGFSFLFVCFIGLVGIVVGYFFHS
A9NNK2_________________MTNEIVTIQPGELSFLFELKKQSSCSLQLVNNMDYDVAFKVKTTSPKKYCVRPNTGVIPPQSTCDVTVTMQAQKEAPPDMQCKDKFLVQSVMIPAGTTAKDITPEMFNKEPGKVYEEHKLRVVYVSPLQTTSPAPESLEEGSAPKDSVDNWSQSVSSLDNVVLKDPSELKTKLSEAMAAISNLMEEKNAIVRQKQQLQQEMATVRKMHHGRSKMGFSFLFVCFIGLVGIVVGYFFHS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
5			33	66	0.997452
326	33	66			0.997452
327	33	66			0.997452
374	14		85		0.993533
377	83		16		0.994512
378			83	16	0.994512
505	14		85		0.993533
506	14		85		0.993533
509		85		14	0.993533
607	16	83			0.994512
643	14		85		0.993533
646		85	14		0.993533
647		85		14	0.993533
675	10			90	0.90298
1057	11			88	0.923564
1087	14		85		0.993533
1092	16	83			0.994512
1094	16	83			0.994512
1095			83	16	0.994512
1096			83	16	0.994512
1120	20			80	0.995493
1124			80	20	0.995493
1141	25		75		0.996473
1142		25		75	0.996473
1144	75			25	0.996473
1145		75		25	0.996473
1237		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain