SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1463

Length: 867 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1463 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5982	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	putative presenilin [Arabidopsis thaliana]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	presenilin family protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inorganic diphosphatase.	EC:3.6.1.1	-	0.0	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	protein tetramerization	GO:0051262	Biological Process	74%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	74%
Blast2go	metabolic process	GO:0008152	Biological Process	74%
Blast2go	inorganic diphosphatase activity	GO:0004427	Molecular Function	74%
Blast2go	integral to membrane	GO:0016021	Cellular Component	74%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	74%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
137	33		66		0.997452
138	33		66		0.997452
143			66	33	0.997452
413	20			80	0.995493
414		80		20	0.995493
415		80	20		0.995493
452		80	20		0.995493
453		80		20	0.995493
568			75	25	0.996473
809	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
646	658	CCT CCT CCT CCT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain