SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1452

Length: 760 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1452 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14033	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Picea sitchensis RepID=C0PT53_PICSI	-	-	91%
FL-Next	sp=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	2c-methyl-d-erythritol -cyclodiphosphate synthase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.	EC:4.6.1.12	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	81%
Blast2go	Biosynthesis of terpenoids and steroids	01062	81%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	81%
Blast2go	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	GO:0008685	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
182	80			20	0.995493
196	16	83			0.994512
200	83			16	0.994512
258	14		85		0.993533
259	14			85	0.993533
261	85		14		0.993533
282	12	87			0.992554
284			12	87	0.992554
285	87			12	0.992554
526	16			83	0.994512
527		16	83		0.994512
528	16			83	0.994512
554	66	33			0.997452
555	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain