SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1448

Length: 461 nt

UniGene Fasta

>biog3_v1.0_unigene1448
TGATCTGGGGTGAAATTGGTTCTAAGTTCACAGAGCTACTAAAAGCGAGAAAACCAGGAGTAGTTGCTTCTCTCATAGGTGCTTGTCGCCGTTTTCAGACGCATCAACGAGAGTGTTGTCGAGCATTAGCCCATGCTGTCAATTCTGATTCTGCTTCTCCAAACTGCATTGTACCACATGTTCTTCATCTGGAAAATGTTCTCAAGTGATACAGGGAGATCCAAGTGGCAATGGCCATCTGGAAATAAGATGTCGGTTCTTGGTTGTGTAATGTTGCAAATCATTTTCAATTATCCAAGTGACTTCATTCAGCAGTTTTGCTCAAGCTTTGCATCCATGGAAATTGATCATATTCTTGAAGCTGCAAAAGATCCTGGTGGTAGTCGAGTAATTGAAGCTTTCCTTTCTTCCAATGCTCCATTAAAGCATAAGCATAGAGTTATTTCAAAGTTACGTGGACA

Ace file of the UniGene biog3_v1.0_unigene1448

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1159	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Pumilio homolog 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	pumilio 23	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	63%
Blast2go	primary metabolic process	GO:0044238	Biological Process	63%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	63%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	63%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	63%
Blast2go	binding	GO:0005488	Molecular Function	63%
Blast2go	catalytic activity	GO:0003824	Molecular Function	63%
Blast2go	nucleolus	GO:0005730	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015706	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C552

Fln msg: Separated hits, possible frame ERROR between 194 and 217, Distance to subject end: 185 aas, your sequence is shorter than subject: 153 - 753

Fln protein: IWGEIGSKFTELLKARKPGVVASLIGACRRFQTHQRECCRALAHAVNSDSASPNCIVPHVLHLxxxxxxxxxRSKWQWPSGNKMSVLGCVMLQIIFNYPSDFIQQFCSSFASMEIDHILEAAKDPGGSRVIEAFLSSNAPLKHKHRVISKLRG

Protein Length: 154

Fln nts: TGATCTGGGGTGAAATTGGTTCTAAGTTCACAGAGCTACTAAAAGCGAGAAAACCAGGAGTAGTTGCTTCTCTCATAGGTGCTTGTCGCCGTTTTCAGACGCATCAACGAGAGTGTTGTCGAGCATTAGCCCATGCTGTCAATTCTGATTCTGCTTCTCCAAACTGCATTGTACCACATGTTCTTCATCTGGAxxxxxxxxxxxxxxxxxxxxxxxxGAGATCCAAGTGGCAATGGCCATCTGGAAATAAGATGTCGGTTCTTGGTTGTGTAATGTTGCAAATCATTTTCAATTATCCAAGTGACTTCATTCAGCAGTTTTGCTCAAGCTTTGCATCCATGGAAATTGATCATATTCTTGAAGCTGCAAAAGATCCTGGTGGTAGTCGAGTAATTGAAGCTTTCCTTTCTTCCAATGCTCCATTAAAGCATAAGCATAGAGTTATTTCAAAGTTACGTGGACA

Fln Alignment:

Contig1448___IWGEIGSKFTELLKARKPGVVASLIGACRRFQTHQRECCRALAHAVNSDSASPNCIVPHVLHLExxxxxxxxRSKWQWPSGNKMSVLGCVMLQIIFNYPSDFIQQFCSSFASMEIDHILEAAKDPGGSRVIEAFLSSNAPLKHKHRVISKLRG
Q9C552_________________MWEELAPRFKDLLEQGKSGVVASLIAVSQRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDxxxxxxxxKSTWEWAPGAKMHVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQKRRLIIKLRG

SNPs (tot: 4)

Position	A %	G %	T %	Probability
260	20		80	0.995493
261	20		80	0.995493
262		80	20	0.995493
329	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain