SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1433

Length: 2051 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1433
CACTCACGCCAAGCAGTGGTGGAAATATGCTTAAATCTCGGGGAGACTCTTGGTCGAGTCTACCAAGGTAACGGGCACTCAACCTCCAAGTGGATGTTGAGGAGGGGGTCTCATTCAATTAATTTATTTAACTGTCCTCTTGGCATTTAAGGCCATTCACACACCTCGCCTTCAGGTTGGTATTCATCCCTACTTCACCATCTGTGGTTCCAGACCCGTGAGGCCCTCTAATTTGTTGCAGGAAGCCAAAGGATCCAGTCGGGTTTTTTTCTATATTTATGATTTGACGCGCCTCTGCAATCCCTCAGAGGTGTTTGCACCATGGAAAAGTCGGTGATGCTCTGTGCCCTGGTGCTGTTTTTGGTATCTTTCATGTCTGCCTGTGCCAGAGAATTATCTGCAACGCATCAAGTTCTGGATGTGGAGGCAGCCTTGAGGGCCAGGACTGGTTCCTCCATGGCTAGTAGTGCCCAAGAATGGAGCGAGACAGTGCCGGGAGAAAAGAGTAACAGCATTGTGCTCAAGATAGTTCACAGAGATTCACTGAGCAGCAGCAGCAACACAAGCTCTGTGAAGGGGGTTTTGCAGGAGAGGCTGAAGCGAGATGCTGCAAGAGTCGATTCCATTAATGCCCGTGTGCAGCTTGCTGCAATGGGGGTCAGCAAATCCGAGTTGAAGCCATTGAATGGTTCCAGCATTGATGCCAGATTCGATGCCAAGGGCTTCAGCAGCTCCATAATCTCTGGTCTGGCACAGGGCAGTGGGGAGTACTTCACAAGGCTGGGAGTGGGTACCCCCCCTCGCTATACCTACATGGTGCTGGACACTGGTAGTGATATAATGTGGATTCAGTGCTTGCCTTGCACTAAGTGCTATGGCCAGACTGATCCCTATTTCAACCCTGCAGCCTCATCCACATTCAGAAAGGTTCCCTGTGCAACTCCCTTGTGCAAGAAACTGGACATCAGTGGCTGCAGAAGCAACAGATATTGTGAATACCAAGTGTCCTATGGAGATGGGTCTTTCACAGTGGGGGATTTCTCCACAGAAACTCTCACATTCAGAGGCCAAGTGATCAAAAGAGTGGCTTTGGGCTGTGGCCATGACAATGAAGGGCTCTTTGTTGGAGCTGCAGGGCTTTTGGGTTTGGGCAGAGGCACACTCTCGTTTCTATCTCAGACCGGGGCACAGTTCAGCAAACGATTTTCTTACTGTTTGGTCGACAGGAGTGCCTCTGGAACCTCAAGTTCCCTGATCTTTGGCGCAGCTGCAGTACCTAAATCTGCAATTTTTACACCGCTCCTGAGCAACCCAAAGCTTGATACTTTCTACTATGTCGAACTGGTGGGTATAAGCGTTGGTGGGAGGAGGCTCACTTCCATTCCTGCCTCTGTGTTTAAGATGGATGCTACTGGCAATGGCGGAGTTATTATCGATTCTGGAACTTCTGTGACTCGTTTGGTTGAATCTGCTTATACTGCAATGAGGGATGCTTTCAGGGCTGGGACTGGGAACCTGAAATCTGCAGGTGGGTTTTCTCTGTTCGATACCTGCTATGATTTATCAGGGTTGAAAACTGTGAAAGTCCCCACTGTGGTCTTTCATTTCCAGGGCCGAGCCGATGTCTCGCTGCCTGCTACTAATTATCTCATTCCAGTGGATAGTTCTGCAACTTTCTGCTTTGCCTTTGCCGGAAACACTGGTGGGCTCTCCATTATTGGCAACATCCAGCAGCAAGGGTACCGTGTAGCGTTTGACAGTCTAACAAATCGTGTGGGATTTAAAGCTGGTTCATGCCTGGCCTAGGAGAGCTTGTTTATTTGATTTTGAGTTTTACTTGTATGGTCTGCCTAACTTAATTTTCTCATATACCGTCCACTGCTATTGTTCTTGCTACCGTTGAAAATTTGGGTATATATTCATACATTGTCCAAATGTATGGAATCTCCATGCCTATTTTTTAGGTTGTAATGTTTTCATATAATTATATGAATATGAATCAAACTATTCTGCTTGGATTAAAGATTTTGTCATTCCAAATGCAGAGATTG

Ace file of the UniGene biog3_v1.0_unigene1433 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11350	250/252

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	7.0e-30	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	aspartyl protease family protein	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	72%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	response to karrikin	GO:0080167	Biological Process	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	0.0	-
Sma3	Peptidase A1	IPR001461	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV06

Fln msg:

Fln protein: MEKSVMLCALVLFLVSFMSACARELSATHQVLDVEAALRARTGSSMASSAQEWSETVPGEKSNSIVLKIVHRDSLSSSSNTSSVKGVLQERLKRDAARVDSINARVQLAAMGVSKSELKPLNGSSIDARFDAKGFSSSIISGLAQGSGEYFTRLGVGTPPRYTYMVLDTGSDIMWIQCLPCTKCYGQTDPYFNPAASSTFRKVPCATPLCKKLDISGCRSNRYCEYQVSYGDGSFTVGDFSTETLTFRGQVIKRVALGCGHDNEGLFVGAAGLLGLGRGTLSFLSQTGAQFSKRFSYCLVDRSASGTSSSLIFGAAAVPKSAIFTPLLSNPKLDTFYYVELVGISVGGRRLTSIPASVFKMDATGNGGVIIDSGTSVTRLVESAYTAMRDAFRAGTGNLKSAGGFSLFDTCYDLSGLKTVKVPTVVFHFQGRADVSLPATNYLIPVDSSATFCFAFAGNTGGLSIIGNIQQQGYRVAFDSLTNRVGFKAGSCLA*

Protein Length: 496

Fln nts: CACTCACGCCAAGCAGTGGTGGAAATATGCTTAAATCTCGGGGAGACTCTTGGTCGAGTCTACCAAGGTAACGGGCACTCAACCTCCAAGTGGATGTTGAGGAGGGGGTCTCATTCAATTAATTTATTTAACTGTCCTCTTGGCATTTAAGGCCATTCACACACCTCGCCTTCAGGTTGGTATTCATCCCTACTTCACCATCTGTGGTTCCAGACCCGTGAGGCCCTCTAATTTGTTGCAGGAAGCCAAAGGATCCAGTCGGGTTTTTTTCTATATTTATGATTTGACGCGCCTCTGCAATCCCTCAGAGGTGTTTGCACC_-_ATGGAAAAGTCGGTGATGCTCTGTGCCCTGGTGCTGTTTTTGGTATCTTTCATGTCTGCCTGTGCCAGAGAATTATCTGCAACGCATCAAGTTCTGGATGTGGAGGCAGCCTTGAGGGCCAGGACTGGTTCCTCCATGGCTAGTAGTGCCCAAGAATGGAGCGAGACAGTGCCGGGAGAAAAGAGTAACAGCATTGTGCTCAAGATAGTTCACAGAGATTCACTGAGCAGCAGCAGCAACACAAGCTCTGTGAAGGGGGTTTTGCAGGAGAGGCTGAAGCGAGATGCTGCAAGAGTCGATTCCATTAATGCCCGTGTGCAGCTTGCTGCAATGGGGGTCAGCAAATCCGAGTTGAAGCCATTGAATGGTTCCAGCATTGATGCCAGATTCGATGCCAAGGGCTTCAGCAGCTCCATAATCTCTGGTCTGGCACAGGGCAGTGGGGAGTACTTCACAAGGCTGGGAGTGGGTACCCCCCCTCGCTATACCTACATGGTGCTGGACACTGGTAGTGATATAATGTGGATTCAGTGCTTGCCTTGCACTAAGTGCTATGGCCAGACTGATCCCTATTTCAACCCTGCAGCCTCATCCACATTCAGAAAGGTTCCCTGTGCAACTCCCTTGTGCAAGAAACTGGACATCAGTGGCTGCAGAAGCAACAGATATTGTGAATACCAAGTGTCCTATGGAGATGGGTCTTTCACAGTGGGGGATTTCTCCACAGAAACTCTCACATTCAGAGGCCAAGTGATCAAAAGAGTGGCTTTGGGCTGTGGCCATGACAATGAAGGGCTCTTTGTTGGAGCTGCAGGGCTTTTGGGTTTGGGCAGAGGCACACTCTCGTTTCTATCTCAGACCGGGGCACAGTTCAGCAAACGATTTTCTTACTGTTTGGTCGACAGGAGTGCCTCTGGAACCTCAAGTTCCCTGATCTTTGGCGCAGCTGCAGTACCTAAATCTGCAATTTTTACACCGCTCCTGAGCAACCCAAAGCTTGATACTTTCTACTATGTCGAACTGGTGGGTATAAGCGTTGGTGGGAGGAGGCTCACTTCCATTCCTGCCTCTGTGTTTAAGATGGATGCTACTGGCAATGGCGGAGTTATTATCGATTCTGGAACTTCTGTGACTCGTTTGGTTGAATCTGCTTATACTGCAATGAGGGATGCTTTCAGGGCTGGGACTGGGAACCTGAAATCTGCAGGTGGGTTTTCTCTGTTCGATACCTGCTATGATTTATCAGGGTTGAAAACTGTGAAAGTCCCCACTGTGGTCTTTCATTTCCAGGGCCGAGCCGATGTCTCGCTGCCTGCTACTAATTATCTCATTCCAGTGGATAGTTCTGCAACTTTCTGCTTTGCCTTTGCCGGAAACACTGGTGGGCTCTCCATTATTGGCAACATCCAGCAGCAAGGGTACCGTGTAGCGTTTGACAGTCTAACAAATCGTGTGGGATTTAAAGCTGGTTCATGCCTGGCCTAG___GAGAGCTTGTTTATTTGATTTTGAGTTTTACTTGTATGGTCTGCCTAACTTAATTTTCTCATATACCGTCCACTGCTATTGTTCTTGCTACCGTTGAAAATTTGGGTATATATTCATACATTGTCCAAATGTATGGAATCTCCATGCCTATTTTTTAGGTTGTAATGTTTTCATATAATTATATGAATATGAATCAAACTATTCTGCTTGGATTAAAGATTTTGTCATTCCAAATGCAGAGATTG

Fln Alignment:

Contig1433___MEKSVMLCALVLFLVSFMSACARE----LSATHQVLDVEAALRARTGSSMASSAQEWSETVPGEKSNSIVLKIVHRDXXXXXXXXXSVKGVLQERLKRDAARVDSINARVQLAAMGVSKSELKPLNGSSIDARFDAKGFSSSIISGLAQGSGEYFTRLGVGTPPRYTYMVLDTGSDIMWIQCLPCTKCYGQTDPYFNPAASSTFRKVPCATPLCKKLDISGCRSNRYCEYQVSYGDGSFTVGDFSTETLTFRGQVIKRVALGCGHDNEXXXXXXXXXXXXXXXXXXXXSQTGAQFSKRFSYCLVDRSASGTSSSLIFGAAAVPKSAIFTPLLSNPKLDTFYYVELVGISVGGRRLTSIPASVFKMDATGNGGVIIDSGTSVTRLVESAYTAMRDAFRAGTGNLKSAGGFSLFDTCYDLSGLKTVKVPTVVFHFQGRADVSLPATNYLIPVDSSATFCFAFAGNTGGLSIIGNIQQQGYRVAFDSLTNRVGFKAGSCLA
A9NV06_________________MEKSVMVSALALFFVCFVSTSVGEIFDELSAGQQVLDVEAALKLRISRSKVS-AQEWSETVQGEEKNSIVLQVVHRDSLSSSSNTSLVKEILQERLKRDAARVDSINARVQLAAMGVSKAEMKPLNGSSIDARFDAKDFSSSIISGLAQGSGEYFTRLGVGTPPRYTYMVLDTGSDIMWIQCLPCAKCYGQTDPLFNPAASSTYRKVPCATPLCKKLDISGCRNKRYCEYQVSYGDGSFTVGDFSTETLTFRGQVIRRVALGCGHDNEGLFIGAAGLLGLGRGSLSFPSQTGAQFSKRFSYCLVDRSASGTASSLIFGKAAIPKSAIFTPLLSNPKLDTFYYVELVGISVGGRRLTSIPASVFRMDATGNGGVIIDSGTSVTRLVDSAYSTMRDAFRVGTGNLKSAGGFSLFDTCYDLSGLKTVKVPTLVFHFQGGAHISLPATNYLIPVDSSATFCFAFAGNTGGLSIIGNIQQQGYRVVFDSLANRVGFKAGSCLA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1826		14	85		0.993533
1828			85	14	0.993533
1829			85	14	0.993533
1830		16	83		0.994512
1833			16	83	0.994512
1854		20		80	0.995493
1855	20		80		0.995493
1856			80	20	0.995493
1873	83		16		0.994512
1874		83		16	0.994512
1897	83	16			0.994512
1898	83	16			0.994512
1899		16		83	0.994512
1916		20	80		0.995493
1918			80	20	0.995493
1919			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1493	1505	TGC TGC TGC TGC T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain