SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1429

Length: 355 nt

UniGene Fasta

>biog3_v1.0_unigene1429
AATGTCCTGATTCTGCGAGGAGAGCTTGTGCAGATCCCGCCCCGATCATCGATGGAAGACGAGCTAATTGCAACCTGGCTTCGCTCGGCTCTCGGCGTTTCCAACCTTGTACACCACGGCCAGGAAATCAGGTCCCGGTGGTGACTTCCTTCCCTCTTCAGACAGGAGGGCCTGGATACCCTGGCCGGCCAACATTTCCTCAACATTTTGGCCAGTATGCATTCCAGGAGGGTTTCCCATATCATATATATGGGTTTTCTCCATACTCCACAGATTACACTTATCCTCCGAACTACTACAATCCATATGGAGGAACTCAGTTTCCCCATATCTATCCGTCCCAGGGAATGACATT

Ace file of the UniGene biog3_v1.0_unigene1429

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61279	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	rna-binding protein	-	-	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV35

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 117 - 295

Fln protein: CPDSARRACADPAPIIDGRRANCNLASLGSRRFQPCTPRPGNQVPVVTSFPLQTGGPGYPGRPTFPQHFGQYAFQEGFPYHIYGFSPYSTDYTYPPNYYNPYGGTQFPHIYPSQGMT

Protein Length: 118

Fln nts: AATGTCCTGATTCTGCGAGGAGAGCTTGTGCAGATCCCGCCCCGATCATCGATGGAAGACGAGCTAATTGCAACCTGGCTTCGCTCGGCTCTCGGCGTTTCCAACCTTGTACACCACGGCCAGGAAATCAGGTCCCGGTGGTGACTTCCTTCCCTCTTCAGACAGGAGGGCCTGGATACCCTGGCCGGCCAACATTTCCTCAACATTTTGGCCAGTATGCATTCCAGGAGGGTTTCCCATATCATATATATGGGTTTTCTCCATACTCCACAGATTACACTTATCCTCCGAACTACTACAATCCATATGGAGGAACTCAGTTTCCCCATATCTATCCGTCCCAGGGAATGACATT

Fln Alignment:

Contig1429___PDSARRACADPAPIIDGRRANCNLASLGSRRFQPCTPRPGNQVPVVTSFP--LQTGGPGYPGRPTFPQHFGQYAFQEGF-PYHIYGFXXXXXXXXXXXXXXXXXGGTQFPHIYP
A9NV35_________________PESAMRACVDSSPIIDGRRANCNLASLGAQRSRPSTPQPGSRFRILGSFPTGLQTGGSFYNVGAAFPQP-AHYGFQQGFSPYHTYGFSSYSSENTFHPNYYSPYGGPHYPQMYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain