SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1391

Length: 903 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1391 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1941	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	f-box family protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	T %	Probability
459	80	20		0.995493
462		80	20	0.995493
847	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain