SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1374

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1374
GGAATGTTGTTCAGAGCCCATTGCCCCTGAAACTGTGGGAACTACTGCTGTTATTGTCTATTGTGGGGTCATGTCAGGTTATCATTGCTAATTGTGGAGATTCAAGAGCTGTTTTATGCCGTGGAGGGAAGGCCATTCCACTTTCAGATGATCACAAACCCCAGAGAGCGGACGAGATGGCAAGGATTGAGGCAGCAGGGGGCAAGGTTATTTGTTGGAATGGATATCGTGTTTTAGGAGTGCTGGCAATGTCAAGGGCCATTGGTGATCGCTATTTGAAGCCATCTATTATTCCTGACCCTGATATTACATTCACTGAACGAGTAAAAGAAGATGAATGTCTGATACTGGCCAGTGATGGATTATGGGACGTTATATCAAATGAGGAGGCGTGTGATATTGCTCGAAGGCGCATCGCTCATTGGCATAATAAGAATCCAGTTACATT

Ace file of the UniGene biog3_v1.0_unigene1374 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1404	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2C n=2 Tax=Physcomitrella patens RepID=B1B5N7_9BRYO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	abscisic acid insensitivity 1b	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	0.0	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8K0

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 148 - 533

Fln protein: NVVQSPLPLKLWELLLLLSIVGSCQVIIANCGDSRAVLCRGGKAIPLSDDHKPQRADEMARIEAAGGKVICWNGYRVLGVLAMSRAIGDRYLKPSIIPDPDITFTERVKEDECLILASDGLWDVISNEEACDIARRRIAHWHNKNPVT

Protein Length: 149

Fln nts: GGAATGTTGTTCAGAGCCCATTGCCCCTGAAACTGTGGGAACTACTGCTGTTATTGTCTATTGTGGGGTCATGTCAGGTTATCATTGCTAATTGTGGAGATTCAAGAGCTGTTTTATGCCGTGGAGGGAAGGCCATTCCACTTTCAGATGATCACAAACCCCAGAGAGCGGACGAGATGGCAAGGATTGAGGCAGCAGGGGGCAAGGTTATTTGTTGGAATGGATATCGTGTTTTAGGAGTGCTGGCAATGTCAAGGGCCATTGGTGATCGCTATTTGAAGCCATCTATTATTCCTGACCCTGATATTACATTCACTGAACGAGTAAAAGAAGATGAATGTCTGATACTGGCCAGTGATGGATTATGGGACGTTATATCAAATGAGGAGGCGTGTGATATTGCTCGAAGGCGCATCGCTCATTGGCATAATAAGAATCCAGTTACATT

Fln Alignment:

Contig1374___SIVGSCQVIIANCGDSRAVLCRGGKAIPLSDDHKPQRADEMARIEAAGGKVICWNGYRVLGVLAMSRAIGDRYLKPSIIPDPDITFTERVKEDECLILASDGLWDVISNEEACDIARRRIAHW--HNKNPVT
D5A8K0_________________AIVSPSQLVIANCGDSRAVLSRGGKAIPLSSDHKPEREDELSRIEAAGGRVIFWNGYRVGGFLAMSRAIGDRFLKRYVISEPEVTCTERTHEDECLILASDGLWDVLSNDVVCEVARKCLAGYRPHRSKGIT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
105	25	75			0.996473
107			75	25	0.996473
108	75		25		0.996473
109		75		25	0.996473
289	33		66		0.997452
293		33		66	0.997452
298		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain