SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1318

Length: 407 nt

UniGene Fasta

>biog3_v1.0_unigene1318
AGCCAGTCATGAAGATTATGGAAGAGATGGTGCATATGATTCCACTAGAAATAGACAGAAGATGAGGCAAAGTGCAGTAGATGGGAGGCCTCTTGGACAACTGAGAGAACGAGAGGAAGGCTTTGGAGGTTATAGTGGGGTACCCATAGATGATACCTTACAAAGGTCTTGGGATGAAGAGAAGGGACTTTCTCTTCTGGAGGACGAGCAGGGGAAAGCAAATACAAATAACAAGCTTTTTGAGCTAGAGGAGCAGATGACCAAAAGAGAGGCTGAACAAAAGTGGGAGGCAGAAGGTGTTCAGAAGATGAAGGAGAAAGGGATAGGGATGCATGTTGAAAAAGAGTGTTCCTTTGAGCAGGAAGTTTCAGTCCGAAACTTAGATCAAAGGCCAATGTTACAAATCA

Ace file of the UniGene biog3_v1.0_unigene1318

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7740	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2823 Predicted periplasmic or secreted lipoprotein	-	-	0.0001	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A844

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 115 - 217

Fln protein: MRQSAVDGRPLGQLREREEGFGGYSGVPIDDTLQRSWDEEKGLSLLEDEQGKANTNNKLFELEEQMTKREAEQKWEAEGVQKMKEKGIGMHVEKECSFEQEVSVRNLDQRPMLQI

Protein Length: 116

Fln nts: AGCCAGTCATGAAGATTATGGAAGAGATGGTGCATATGATTCCACTAGAAATAGACAGAAG_-_ATGAGGCAAAGTGCAGTAGATGGGAGGCCTCTTGGACAACTGAGAGAACGAGAGGAAGGCTTTGGAGGTTATAGTGGGGTACCCATAGATGATACCTTACAAAGGTCTTGGGATGAAGAGAAGGGACTTTCTCTTCTGGAGGACGAGCAGGGGAAAGCAAATACAAATAACAAGCTTTTTGAGCTAGAGGAGCAGATGACCAAAAGAGAGGCTGAACAAAAGTGGGAGGCAGAAGGTGTTCAGAAGATGAAGGAGAAAGGGATAGGGATGCATGTTGAAAAAGAGTGTTCCTTTGAGCAGGAAGTTTCAGTCCGAAACTTAGATCAAAGGCCAATGTTACAAATCA

Fln Alignment:

Contig1318___RNRQKMRQSAVDGRPLGQLREREEGFGGYSGVPIDDTLQRSWDEEKGLSLLEDEQGKANTNNKLFELEEQMTKREAEQKWEAEGVQKMKEKGIGMHVEKECSFEQEVSVRNLDQRPMLQI
D5A844_________________KNRQKMRQSAADGRPLGQLKEREEGFGGYTGVPRDDTLLRSLGQEKGLSLTEEEQRKANTKNKHLELEEQITKREAEQNWEAEDVQKMREK--GLHVEKECSFEQEVSVGNLDQMSRLQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain