SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1283

Length: 869 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1283 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18581	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	actin bundling protein ABP135 [Lilium longiflorum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	villin 2	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	actin filament severing	GO:0051014	Biological Process	74%
Blast2go	actin filament bundle assembly	GO:0051017	Biological Process	74%
Blast2go	actin filament binding	GO:0051015	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL35

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 289 - 610

Fln protein: MYEYHEGKCDIAIVDDGKLVAESDSGEFWALFGGFAPIGKKNGNDDDSRMESTPGKLYSIVEGEIKIIEGPLSKSMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLIAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGSGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKDDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLLH

Protein Length: 290

Fln nts: AATGTATGAATACCATGAAGGGAAATGTGACATTGCAATAGTTGATGATGGGAAGCTTGTAGCAGAATCTGACTCCGGAGAGTTTTGGGCTCTGTTCGGAGGTTTTGCTCCCATTGGCAAGAAGAATGGCAATGATGATGATTCTAGAATGGAATCAACTCCTGGAAAACTTTACAGCATTGTGGAAGGGGAGATAAAGATTATTGAGGGTCCCTTGTCTAAGAGTATGCTGGAGTCAAACAAATGTTATCTACTTGATTGTGGTGCCGAGGTATATGTGTGGGTTGGTCGAGTGACACAATTGGAGGAGAGAAAGTCTGCAAGTCTAATTGCAGAGGAATTCATTTCTAATCAAAAACGACCGAGGAACACACACATAACTCGAGTTATCCAGGGATTTGAGACACTGCCTTTTAGGTCAAATTTTGACTCATGGTCACTTGGCAGTGGAACTTCGGGCTCTGAGGATGGAAGAGGCAAAGTTGCTGCATTACTGAAGCAACAAGGAATCAATGTGAAGGGAATTTTGAAGGCAACTCCACTGAAAGAAGAAATTCCACCATTGCTTGAGGGAAATGGGAAACTTGAGGTTTGGAGGGTCAAGAATGTTTCTAAAGCCCCAGTTCCTAAAGAGGATATTGGCAAATTCTACAGTGGTGACTGCTATATTATACTTTATACTTACCACTCTGGAGATAGAAAAGATGATTATTTTCTTTGCTTCTGGCTAGGGAAACAGAGCACCCAGGAGGATCAAGCAGTAGCAGCTCGTTTAACAAATACAATGGCTAACTCTCTAAAAGGAAGACCTGTACAGGGACGTATTCTAGAAGGAAAAGAGCCACCTCAGTTTATTGGATTATTACATT

Fln Alignment:

Contig1283___EYHEGKCDIAIVDDGKLVAESDSGEFWALFGGFAPIGKKNGNDDDSRMESTPGKLYSIVEGEIKIIEGPLSKSMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLIAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGSGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKDDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGL
B8LL35_________________EYHEGKCDIAVIDDGKLVAESDSGEFWALFGGFAPIGKKNGSDDDSRMESTPGKLYSIVEGEIKIVEGPLSKGMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLTAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGTGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKEDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
535	33			66	0.997452
536	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain