SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1246

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1246
CGGGAGCACTTAAGTCGGCTCACGCAGTGGCTGTAAACAACCTGTAGCATCCATTTATAATAACAGTGGAGCTGAATAGCATCCGTTTATAATAACAGTGGAGCTGAATTTGCTGAATCTGAGAGTGTCAATGGAGGCTAATAAGCGTTTATTAGGGGCATGGTTCCTCCTGGCCGTCCTAGCGATGGTTCAGCATGTGTCTGCAACGGATCACATTGTCGGTGGCAACAGGGGATGGAACCCCAACATTAACTACACCGACTGGGTGAAGAGTCAAGACTTCGTCCTTCTCGACTGGATCTCGTTCAGGTACCAGAAAGATCAGCACAACGTGGTTCAGGTAAATCAGTCGGGCTACGATAACACATT

Ace file of the UniGene biog3_v1.0_unigene1246 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17224	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cu_bind_like domain containing protein	-	-	3.0e-18	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	blue copper-like protein	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastocyanin-like	IPR003245	-	0.0	-
Sma3	Cupredoxin	IPR008972	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB00

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 79 - 170

Fln protein: MEANKRLLGAWFLLAVLAMVQHVSATDHIVGGNRGWNPNINYTDWVKSQDFVLLDWISFRYQKDQHNVVQVNQSGYDNT

Protein Length: 80

Fln nts: CGGGAGCACTTAAGTCGGCTCACGCAGTGGCTGTAAACAACCTGTAGCATCCATTTATAATAACAGTGGAGCTGAATAGCATCCGTTTATAATAACAGTGGAGCTGAATTTGCTGAATCTGAGAGTGTCA_-_ATGGAGGCTAATAAGCGTTTATTAGGGGCATGGTTCCTCCTGGCCGTCCTAGCGATGGTTCAGCATGTGTCTGCAACGGATCACATTGTCGGTGGCAACAGGGGATGGAACCCCAACATTAACTACACCGACTGGGTGAAGAGTCAAGACTTCGTCCTTCTCGACTGGATCTCGTTCAGGTACCAGAAAGATCAGCACAACGTGGTTCAGGTAAATCAGTCGGGCTACGATAACACATT

Fln Alignment:

Contig1246___MEANKRLLGAWFLLAVLAMVQHVSATDHIVGGNRGWNPNINYTDWVKSQDFVLLDWISFRYQKDQHNVVQVNQSGYDN
D5AB00_________________MEANKRLAWAWLLLATLAMVHHVSATDHIVGGNRGWNQGINYTDWVNSQTFVLLDWISFRYQKDQHNVVQVNQSGYDN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
148	16	83			0.994512
149		83		16	0.994512
152		83		16	0.994512
206	83		16		0.994512
359	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain