SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1207

Length: 2443 nt

UniGene Fasta

>biog3_v1.0_unigene1207
TGCGGGCGGATCGTGCTGGGATATTTTCGTTGGTGTGGAAAAAGAAAAGCGGTTCGGTAGCCCAAGTCTGAGGTTCGGTTCACATATTTCGCGGACCTATAAATCCTACCGCCTGACAATTTGTTCCGGCTCTTCAACATAGGGAAGGAAGCTTGGGAACCTTTTAACTGTGAGATTGATCAGGCGTCCCCCAGCCTCTGCTTCTTATGCTTCTTATTCTCAACATCCAATTTTTACCTTTCAATTTCCTCAGCAGATCATCGGATCCCCTGCTCTTCAGAAGGTTTTTTCCCCTTTTTGGAGTAGTTTCTTAGAGAAAAGAGGAGAAGATGGTGTCAGACGCGAGTAAGAAGAAGGCCGCCGCCAAGAAAGCTGCCGCAGCCGCAAAGAGGGGATCGAAGTCCGCAACGGCGGCGACGTCGTCAAAGGCAACGTCAACAGAGGTATCGCAGAATGGACACGCCGAGACGGCGGCCGATCAGCTGGCGGATTTGCAGATATCTGATCGAACGTGTACTGGGGTTCTTACCTCTCATGCCCTCTCTAGAGACATTCATATAGAGTCCCTATCAGTTACATTCCATGGTCATGAGTTGATTGTCGATTCAGAGCTCGAACTGAATTATGGAAGGCGCTATGGATTACTTGGGCTCAATGGATGTGGTAAGTCTACACTCCTTACTGCTCTGGGATGTCGGGAGATTCCCATACCAGATCATATGGATATTTATCATTTGACCAGGGAAATAGAAGCAACTGATATGACTGCACTTGAGGCCGTGATGAACTGTGACGAAGAGAGGCTAAAAATCGAGAAGGAAGCTGAAGCTCTTGCTGCACAAGATGATGGAGGTGGAGAGGCACTAGATCGATTATATGAGCGTCTAGAATCCTTGGATGCTGCAACAGCAGAAAAGCGAGCAGCTGAAATTTTATTTGGCTTAGGTTTTGATAAAAAAATGCAAGCGAAAAAGACAAGTGACTTCTCTGGTGGTTGGCGTATGCGAATAGCTCTGGCACGAGCGTTATTCATGAATCCTACAGTTTTGTTACTAGATGAACCTACAAATCATCTTGATCTTGAAGCTTGTGTATGGCTCGAGGAAATGCTGAAAAAATTTGATCGCATTTTGGTTGTAATATCACATTCGCAAGATTTTCTCAATGGAATTTGTACTAACATCATTCATATGCAAAATAAAAAGTTGAAATTGTATACGGGAAATTATGATCAGTATGTTCAAACAAGAACTGATCTTGAGGAAAACCAGATGAAGCAGTACAGATGGGAGCAGGAGCAGATAGCATCAATGAAGGAATATATAGCTAGATTTGGTCATGGTTCTGCAAAACTTGCTAGGCAAGCCCAAAGTAAAGAAAAGACCCTGGCAAAGATGGAAAGAGGTGGGCTAACGGAAAGAGTGGTCAGAGATAAAGTATTAGTGTTCCGTTTCACCGATGTTGGGAAGCTTCCTCCACCTGTTCTGCAGTTCGTGGAAGTAGACTTTGGGTACACTCCTGAAAACCTTATATATAAGAATATAGATTTTGGAGTGGATCTGGATTCAAGGATAGCTTTGGTTGGTCCAAATGGAGCAGGAAAGAGCACATTATTAAAGCTAATGACCGGAGAATTGACCCCATTGGACGGCATGGTGAAGCGCCATAACCATCTTCGTATTGCTCAGTTTCACCAGCATTTGGCAGACAAACTAGACCTGTCTGTGTCTGCGCTCCAATACATGATGAATGAATATCCAGGTATTGAAGAAGAGAAAATGCGAGCGGCAATTGGGAAATTTGGTTTGACAGGAAAAGGTCAGATTATGCCGATGCAGAATTTATCTGATGGGCAGAGGAGTCGCGTGATTTTTGCATGGCTTGCTTGGAGATTACCACATCTTCTATTGCTAGATGAACCAACTAATCATCTTGACATTGAAACCATTGATTCACTCGCAGAGGCACTGAATGAGTGGGATGGAGGACTTGTTTTGGTTAGCCACGATTTCAGGCTCATAAACCAAGTGGCCAAAGAGATATGGGTATGTGAAAATAAGAAAGTCACGAGATGGGGAGGTGATATTATGGATTTCAAGCGACACTTGAAAAGCAAGGCTGGCCTGTGAGTGCATTTGCTATCATCGTAGGTTAACGTGTATGCCACCAGAAGATTTTTCTGGCGAGACCTAGAGAACGTGATTAGGATTTAATTATTTTTGTATTTAGGAATGCGCCTTAGGGCAAGAAATATAGTCAATTCAGTTGTATTGATTAAGTTTGATGACTTTGGGTAACATAGTACATTTATCTTAGCTTTCTGTTTCATTGGTTATAACTCTTATGGTCCCGCACAAAAATTCATTGCAAAAGAGGGATAACATTTATTTCTCATTAAATGGCGCTGCTATATTGATAATTGATGATTGCCTTATTTGACATT

Ace file of the UniGene biog3_v1.0_unigene1207

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15617	436/446
SustainPine v2.0	sp_v2.0_unigene61132	3/446
SustainPine v2.0	sp_v2.0_unigene70236	2/446

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter [Pteris vittata]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	atp-binding cassette transporter	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC5

Fln msg:

Fln protein: MVSDASKKKAAAKKAAAAAKRGSKSATAATSSKATSTEVSQNGHAETAADQLADLQISDRTCTGVLTSHALSRDIHIESLSVTFHGHELIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCREIPIPDHMDIYHLTREIEATDMTALEAVMNCDEERLKIEKEAEALAAQDDGGGEALDRLYERLESLDAATAEKRAAEILFGLGFDKKMQAKKTSDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEEMLKKFDRILVVISHSQDFLNGICTNIIHMQNKKLKLYTGNYDQYVQTRTDLEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVVRDKVLVFRFTDVGKLPPPVLQFVEVDFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELTPLDGMVKRHNHLRIAQFHQHLADKLDLSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGKGQIMPMQNLSDGQRSRVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCENKKVTRWGGDIMDFKRHLKSKAGL*

Protein Length: 601

Fln nts: TGCGGGCGGATCGTGCTGGGATATTTTCGTTGGTGTGGAAAAAGAAAAGCGGTTCGGTAGCCCAAGTCTGAGGTTCGGTTCACATATTTCGCGGACCTATAAATCCTACCGCCTGACAATTTGTTCCGGCTCTTCAACATAGGGAAGGAAGCTTGGGAACCTTTTAACTGTGAGATTGATCAGGCGTCCCCCAGCCTCTGCTTCTTATGCTTCTTATTCTCAACATCCAATTTTTACCTTTCAATTTCCTCAGCAGATCATCGGATCCCCTGCTCTTCAGAAGGTTTTTTCCCCTTTTTGGAGTAGTTTCTTAGAGAAAAGAGGAGAAG_-_ATGGTGTCAGACGCGAGTAAGAAGAAGGCCGCCGCCAAGAAAGCTGCCGCAGCCGCAAAGAGGGGATCGAAGTCCGCAACGGCGGCGACGTCGTCAAAGGCAACGTCAACAGAGGTATCGCAGAATGGACACGCCGAGACGGCGGCCGATCAGCTGGCGGATTTGCAGATATCTGATCGAACGTGTACTGGGGTTCTTACCTCTCATGCCCTCTCTAGAGACATTCATATAGAGTCCCTATCAGTTACATTCCATGGTCATGAGTTGATTGTCGATTCAGAGCTCGAACTGAATTATGGAAGGCGCTATGGATTACTTGGGCTCAATGGATGTGGTAAGTCTACACTCCTTACTGCTCTGGGATGTCGGGAGATTCCCATACCAGATCATATGGATATTTATCATTTGACCAGGGAAATAGAAGCAACTGATATGACTGCACTTGAGGCCGTGATGAACTGTGACGAAGAGAGGCTAAAAATCGAGAAGGAAGCTGAAGCTCTTGCTGCACAAGATGATGGAGGTGGAGAGGCACTAGATCGATTATATGAGCGTCTAGAATCCTTGGATGCTGCAACAGCAGAAAAGCGAGCAGCTGAAATTTTATTTGGCTTAGGTTTTGATAAAAAAATGCAAGCGAAAAAGACAAGTGACTTCTCTGGTGGTTGGCGTATGCGAATAGCTCTGGCACGAGCGTTATTCATGAATCCTACAGTTTTGTTACTAGATGAACCTACAAATCATCTTGATCTTGAAGCTTGTGTATGGCTCGAGGAAATGCTGAAAAAATTTGATCGCATTTTGGTTGTAATATCACATTCGCAAGATTTTCTCAATGGAATTTGTACTAACATCATTCATATGCAAAATAAAAAGTTGAAATTGTATACGGGAAATTATGATCAGTATGTTCAAACAAGAACTGATCTTGAGGAAAACCAGATGAAGCAGTACAGATGGGAGCAGGAGCAGATAGCATCAATGAAGGAATATATAGCTAGATTTGGTCATGGTTCTGCAAAACTTGCTAGGCAAGCCCAAAGTAAAGAAAAGACCCTGGCAAAGATGGAAAGAGGTGGGCTAACGGAAAGAGTGGTCAGAGATAAAGTATTAGTGTTCCGTTTCACCGATGTTGGGAAGCTTCCTCCACCTGTTCTGCAGTTCGTGGAAGTAGACTTTGGGTACACTCCTGAAAACCTTATATATAAGAATATAGATTTTGGAGTGGATCTGGATTCAAGGATAGCTTTGGTTGGTCCAAATGGAGCAGGAAAGAGCACATTATTAAAGCTAATGACCGGAGAATTGACCCCATTGGACGGCATGGTGAAGCGCCATAACCATCTTCGTATTGCTCAGTTTCACCAGCATTTGGCAGACAAACTAGACCTGTCTGTGTCTGCGCTCCAATACATGATGAATGAATATCCAGGTATTGAAGAAGAGAAAATGCGAGCGGCAATTGGGAAATTTGGTTTGACAGGAAAAGGTCAGATTATGCCGATGCAGAATTTATCTGATGGGCAGAGGAGTCGCGTGATTTTTGCATGGCTTGCTTGGAGATTACCACATCTTCTATTGCTAGATGAACCAACTAATCATCTTGACATTGAAACCATTGATTCACTCGCAGAGGCACTGAATGAGTGGGATGGAGGACTTGTTTTGGTTAGCCACGATTTCAGGCTCATAAACCAAGTGGCCAAAGAGATATGGGTATGTGAAAATAAGAAAGTCACGAGATGGGGAGGTGATATTATGGATTTCAAGCGACACTTGAAAAGCAAGGCTGGCCTGTGA___GTGCATTTGCTATCATCGTAGGTTAACGTGTATGCCACCAGAAGATTTTTCTGGCGAGACCTAGAGAACGTGATTAGGATTTAATTATTTTTGTATTTAGGAATGCGCCTTAGGGCAAGAAATATAGTCAATTCAGTTGTATTGATTAAGTTTGATGACTTTGGGTAACATAGTACATTTATCTTAGCTTTCTGTTTCATTGGTTATAACTCTTATGGTCCCGCACAAAAATTCATTGCAAAAGAGGGATAACATTTATTTCTCATTAAATGGCGCTGCTATATTGATAATTGATGATTGCCTTATTTGACATT

Fln Alignment:

Contig1207___EVSQNGHAETAADQLADLQISDRTCTGVLTSHALSRDIHIESLSVTFHGHELIVDSELEXXXXXXXXXXXXXXCGKSTLLTALGCREIPIPDHMDIYHLTREIEATDMTALEAVMNCDXXXXXXXXXXXXXXXQDDGGGEALDRLYERLESLDAATAEKRAAEILFGLGFDKKMQAKKTSDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEEMLKKFDRILVVISHSQDFLNGICTNIIHMQNKKLKLYTGNYDQYVQTRTDLEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVVRDKVLVFRFTDVGKLPPPVLQFVEVDFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELTPLDGMVKRHNHLRIAQFHQHLADKLDLSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGKGQIMPMQNLSDGQRSRVIFXXXXXXXXXXXXXDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCENKKVTRWGGDIMDFKRHLKSKAG
A9NVC5_________________DVSQNGNAERVADQLADLQISDRTCTGVLTSHALSRDIHIESLSVTFHGHELIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCREIPIPDHMDIYHLTREIEATDMTSLEAVMNCDEERLKLEKEAEALAAQDDGGGEALDLLYERLESLDAATAEKRAAEILFGLGFDKKMQTKKTSDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEEMLKKFDRILVVVSHSQDFLNGICTNIIHMQNKKLKLYTGNYDQYVQTRTDLEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFTDVGKLPPPVLQFVEVDFGYTPENLIYKSIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELTPLDGMVKRHNHLRIAQFHQHLADKLELSVSALQYMMNEYPGIEEEKMRAAIGKFGLTGKAQIMPMENLSDGQRSRVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCENKRVTRWGGDIMDFKRHLKSKAG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
152	11	88			0.923564
153	11			88	0.923564
156			88	11	0.923564
311		50	50		1.0
315	50		50		1.0
637	7			92	0.999602
641			92	7	0.999602
649	7		92		0.999602
650		7	92		0.999602
651	7		92		0.999602
652		92		7	0.999602
820		7	92		0.999532
822	94			5	0.998744
823	2		88	8	0.999999
841		95		4	0.995055
957	90	10			0.90298
959	90			10	0.90298
960	80			20	0.999996
966	90			10	0.90298
967			90	10	0.90298
1197	88	11			0.999952
1199	88			11	0.999952
1240		13	86		0.999973
1401	94	5			0.998894
1403			94	5	0.998894
1404	94			5	0.998894
1415		93		6	0.999153
1449	6	93			0.999264
1451	6		93		0.999264
1539		12	80	8	1.0
1540	92			8	0.999718
1541	86			13	1.0
1665	6	93			0.999999
1669	93			6	0.999999
1844	4			95	0.997218
1872	4			95	0.997218
1873		4		95	0.997218
1897		90		2	0.999997
1925		94		5	0.998744
2218		9		72	0.999994
2224	10			90	0.90298
2313	10	90			0.90298
2316	10			90	0.90298
2318	12		87		0.992554
2320	12			87	0.992554
2335	14			85	0.993533
2336		14		85	0.993533
2339	85			14	0.993533
2422	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain