SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1205

Length: 512 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1205
GTTTGGTCTTTAGGAAGGTACCTAAGCTGTATTTTGAGATTTGCAGGAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAAATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTTGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAAGTTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGATGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATA

Ace file of the UniGene biog3_v1.0_unigene1205 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1349	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA	-	-	4.0e-14	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	ethylene-responsive element binding factor-like protein	-	-	1.6707e-15	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.6707e-15	89%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.6707e-15	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.6707e-15	89%
Blast2go	nucleus	GO:0005634	Cellular Component	1.6707e-15	89%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR004348	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMP1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 77 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 95 - 225

Fln protein: MLRQQARNAWHDVENVTKVKSTVKEVKFRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTAEEAARAYDEAARALRGAKAKTKFRRSLRRSEYKP*

Protein Length: 96

Fln nts: GTTTGGTCTTTAGGAAGGTACCTAAGCTGTATTTTGAGATTTGCAGGAAACAATCTGTAAATCTCTCTGTTTTAAACCTTTGGGCTTGTAGCTGGTTGTCTGTTCCCTAAA_-_ATGCTCAGGCAGCAAGCGAGAAATGCCTGGCATGACGTTGAAAACGTCACGAAAGTCAAGTCTACAGTCAAAGAAGTGAAATTTCGAGGTGTTCGCAAGCGTCCATGGGGAAGATTTGCTGCGGAGATTAGAGATCCGGTGAAAAAGGCAAGAGTTTGGCTTGGTACATTTGATACGGCTGAAGAAGCGGCTCGTGCTTACGATGAAGCTGCTAGAGCTCTGAGAGGAGCCAAGGCAAAGACAAAGTTTCGCCGTTCCCTGCGACGATCAGAGTACAAGCCATAGCAGCACCGTGGAGTCTTCGAGCGGTCCAAGAAATCAGGATGACTCGAAGAAAGCTTTCAATTTGAACGGCAGGGGAACAAGGTTGGTCGAAATTAGCACTAGAACTCATCGGAATA

Fln Alignment:

Contig1205___FRGVRKRPWGRFAAEIRDPVKKARVWLGTFDTXXXXXXXXXXXXXXXRGAKAKTKF
A9NMP1_________________FRGVRKRPWGRFAAEIRDPLKKTRVWLGTFDTAEEAARAYDNAARNLRGAKAKTNF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
314		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain