SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1185

Length: 1158 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1185 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17341	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 76 [Arabidopsis thaliana] sp\|Q94AT1.1\|P2C76_ARATH RecName: Full=Probable protein phosphatase 2C 76; Short=AtPP2C76 gb\|AAK76493.1\| putative protein phosphatase 2C [Arabidopsis thaliana] gb\|AAM14299.1\| putative phosphatase 2C	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein phosphatase 2c	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPR6

Fln msg:

Fln protein: MYESGLMRSGFRILSALSPLTRRPVSDLKLKWSSFSSNISTHIFNHNNNRSELEMMRMAFDSTGATVANPTPSSRQHFGTISGGGLSEDRRVTFGYSSFQGKRATMEDFYDAKISKVHDQMVGLFGVFDGHGGSRAAEYLKQHLFENLINHPQFATDTKLALSETYQQTDSEFLKAETSIYRDDGSTASTAVLVGDRLYVANVGDSRAVILKAGEAIPLSEDHKPNRSDERQRIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKRFVVAEPEIQEEIIKDDVEFLVIASDGLWDVISNEDAVSLVKSIEDPEAAARKLTETAFAKGSADNITCIVVRFNHSKNDLT*

Protein Length: 349

Fln nts: CTTGCCTGCTTGTCTGTGTGAAGAGAAAAGCCAAAGCTGGCTGG_-_ATGTATGAAAGTGGTCTGATGCGCAGCGGATTTCGGATCTTATCAGCGCTGAGCCCTTTAACCAGAAGGCCTGTGTCGGATCTCAAATTGAAATGGTCTTCTTTCAGTAGTAATATCAGCACTCATATCTTTAACCATAATAACAACAGAAGCGAGCTCGAGATGATGAGAATGGCGTTCGATTCCACTGGCGCAACTGTGGCGAATCCTACTCCCTCCAGTAGGCAGCACTTCGGCACTATAAGCGGTGGAGGCCTCAGTGAAGATAGGCGAGTTACCTTTGGATATTCCAGCTTTCAAGGAAAGAGAGCAACAATGGAGGACTTTTATGATGCAAAGATATCAAAGGTTCATGATCAGATGGTTGGCTTATTTGGTGTTTTTGATGGCCACGGTGGTTCTCGTGCTGCTGAATATTTGAAGCAACACCTTTTTGAGAATTTGATAAATCATCCCCAATTTGCAACAGACACCAAGCTGGCTTTATCTGAAACCTATCAGCAAACTGATTCCGAATTCTTAAAGGCTGAAACTAGTATTTACAGAGATGATGGTTCAACAGCTTCAACTGCAGTGTTAGTAGGGGATCGCTTGTATGTTGCTAATGTGGGAGACTCACGAGCAGTGATTTTAAAAGCCGGCGAAGCCATTCCTCTTTCTGAGGATCACAAGCCAAATAGAAGTGATGAACGCCAGCGCATCGAGCAAGCTGGAGGGAATGTTATGTGGGCTGGAACATGGAGGGTAGGAGGTGTGCTGGCTGTATCTCGTGCATTTGGTAACCGTTTACTGAAACGCTTTGTTGTTGCAGAACCTGAGATTCAGGAAGAAATCATTAAAGATGATGTTGAATTTCTGGTTATAGCAAGTGATGGCCTATGGGATGTAATTTCAAACGAGGATGCAGTTTCACTTGTTAAATCAATTGAAGATCCAGAAGCTGCTGCCAGGAAATTGACTGAAACTGCCTTTGCAAAAGGCAGTGCTGACAATATCACTTGCATTGTTGTTCGATTTAATCATAGCAAAAACGATTTAACTTGA___TATTATTGCAGATGCTTTCTTGGCATCATATAGTTTTTGCACGAGTTGTTGATCTAAAGTGTCTGACATT

Fln Alignment:

Contig1185___MYESGLMRSGFRILSALSPLTRRPVSDLKLKWSSFS-SNISTHIFNHNNNRSELEMMRMAFDSTGATVANPTPSSRQHFGTISGGGLSEDRRVTFGYSSFQGKRATMEDFYDAKISKVHDQMVGLFGVFDGHGGSRAAEYLKQHLFENLINHPQFATDTKLALSETYQQTDSEFLKAETSIYRDDGSTASTAVLVGDRLYVANVGDSRAVILKAGEAIPLSEDHKPNRSDERQRIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKRFVVAEPEIQEEIIKDDVEFLVIASDGLWDVISNEDAVSLVKSIEDPEAAARKLTETAFAKGSADNITCIVVRFNHSKNDLT
B8LPR6_________________MYESGLMRSGLRILSALNPLITRPVSDLKSKWSSLRISNISTHIFNNNNNRSELEMMRMAFDSSGGTVANPPPSSRQHFGPISGGGLSEDRRVTFGYSSFQGKRATMEDFYDAKISKVDDQMVGLFGVFDGHGGSRAAEYLKQHLFENLINHPQFATDTKLALSETYQQTDSEFLKAETSIYRDDGSTASTAVLVGDRLYVANVGDSRAVILKAGEAIPLSEDHKPNRSDERQRIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKRFVVAEPEIQEEIIKDDVEFLVIASDGLWDVISNEDAVSLVKSIEDPEAAARKLTETAYAKGSADNITCVVVRFNHSKNVLT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
937	14		85		0.993533
942	14	85			0.993533
981		16	83		0.994512
982	16		83		0.994512
983	16			83	0.994512
984		16		83	0.994512
986	80			20	0.995493
987	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain