SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1180

Length: 661 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1180 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9242	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Protein PPLZ12, putative n=1 Tax=Ricinus communis RepID=B9R9P0_RICCO	-	-	78%
FL-Next	sp=Protein PPLZ12; Lupinus polyphyllus (Large-leaved lupin).	-	-	77%
Blast2go	hypersensitive-induced reaction protein 4	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Band 7 protein	IPR001107	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
135		50		50	1.0
136	50		50		1.0
137			25	75	0.996473
192	20	80			0.995493
195	80			20	0.995493
235	16	83			0.994512
236	16	83			0.994512
291	14			85	0.993533
326		85	14		0.993533
327		85		14	0.993533
473	25	75			0.996473
475			25	75	0.996473
476			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain