SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1177

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1177
CATCGGAAAGTGAGGAGATTGTCGGAGTGTCGATGCCAATCTAGGTCTAGGATCTGCAGTTTTGCTGCGCAATCTTCCTCTGCCTTGTGTCCGTTGGAGTGTGCTGACTGCTCTGGGGAGCAGCATGGGGAATCCTGTCAGGGATCGGATGATTATATCATTCCCGGTCTCTATGATGATAACATAGAGAGAAATTGCCTCGCTCGATTGTCAAGATCAGATTATGGTTCGCTGGCTTTGGTGAATCGAAGGTTGCGTTCACTTGTTCGAAGCGGCGAGCTTTATGTTCTGAGGAGAGAACTTGGAATAGTGGAGCATTGGATTTACTTAGCGTGCAACCTGGAACGATGGGAGGCATTTGATCCCACACGGCAACGTTGGATGCGCTTGCCAAGGATGCAAGCCGATGACTGTTTTATTTTTGCAGATAAGGAGTCTTTGGCAGTTGGCACTGAATTGCTTGTTTTTGGGAGGGAGGTGACAGGATTTGTCATCTGGAGGTACAGTATTTTGACACACAGCTGGTATAGAGGACCACCGATGAATCTGCCGAGGTGCTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene1177 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22913	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|Q9FKJ0.1\|FK132_ARATH RecName: Full=F-box/kelch-repeat protein At5g60570 dbj\|BAB08240.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABM06035.1\| At5g60570 [Arabidopsis thaliana] gb\|AED97346.1\| F-bo	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	f-box family protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	6-phosphogluconate-binding site	IPR006184	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	RINT-1/TIP-1	IPR007528	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 189 - 432

Fln protein: HRKVRRLSECRCQSRSRICSFAAQSSSALCPLECADCSGEQHGESCQGSDDYIIPGLYDDNIERNCLARLSRSDYGSLALVNRRLRSLVRSGELYVLRRELGIVEHWIYLACNLERWEAFDPTRQRWMRLPRMQADDCFIFADKESLAVGTELLVFGREVTGFVIWRYSILTHSWYRGPPMNLPRCLYI

Protein Length: 190

Fln nts: CATCGGAAAGTGAGGAGATTGTCGGAGTGTCGATGCCAATCTAGGTCTAGGATCTGCAGTTTTGCTGCGCAATCTTCCTCTGCCTTGTGTCCGTTGGAGTGTGCTGACTGCTCTGGGGAGCAGCATGGGGAATCCTGTCAGGGATCGGATGATTATATCATTCCCGGTCTCTATGATGATAACATAGAGAGAAATTGCCTCGCTCGATTGTCAAGATCAGATTATGGTTCGCTGGCTTTGGTGAATCGAAGGTTGCGTTCACTTGTTCGAAGCGGCGAGCTTTATGTTCTGAGGAGAGAACTTGGAATAGTGGAGCATTGGATTTACTTAGCGTGCAACCTGGAACGATGGGAGGCATTTGATCCCACACGGCAACGTTGGATGCGCTTGCCAAGGATGCAAGCCGATGACTGTTTTATTTTTGCAGATAAGGAGTCTTTGGCAGTTGGCACTGAATTGCTTGTTTTTGGGAGGGAGGTGACAGGATTTGTCATCTGGAGGTACAGTATTTTGACACACAGCTGGTATAGAGGACCACCGATGAATCTGCCGAGGTGCTTGTACATT

Fln Alignment:

Contig1177___CSGEQHGESCQG--SDDYIIPGLYDDNIERNCLARLSRSDYGXXXXXXXXXXXXXXSGELYVLRRELGIVEHWIYLACNLERWEAFDPTRQRWMRLPRMQADDCFIFADKESLAVGTELLVFGREVTGFVIWRYSILTHSWYRGPPMNLPRCLY
B8LQD3_________________CQGEQYDAENQGEGTHDSMIPGLHDD-LGLDCLALTSRSDYGSLACLNKRFNYLVRSGYLYHLRRQLGIVEQWIYLMCNLIGWEAFDPYRERWMRLHRIPSDECFNYADKESLAVGTELLVFGREVFGFAIWRYSLLTHSWARGPGMASPRCLF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
267			75	25	0.996473
268			25	75	0.996473
341	20	80			0.995493
342		80		20	0.995493
343	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain