SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1170

Length: 372 nt

UniGene Fasta

>biog3_v1.0_unigene1170
AATGTCTCGTTGCCAAGGCGTTGGTTCGAGATATGATGTGTTGACTGAGCTTTCCAGAAGAGAGAAACAACTAGGAGTGAAACCAGATGCCGATGTTGATGTTTTCATGAAGGCAACAGCAATAGAGGGACAAGAAACCAGTGTTATGACGGACTATGTTTTGAAGATATTGGGGTTAGACATATGCGCGGATACGATGGTAGGAGATGGTATGCGGCGGGGCATTTCTGGAGGTCAGAAGAAGAGAGTCACAACGGGGGAGATGATGGTGGGCGGTGCCAAAGTTTTTCTGATGGATGAAATTTCAACGGGGTTGGACAGTTCTACCACATATCAAATTGTCCGATGCTTCTCCCAGTTCGTTCATATAAT

Ace file of the UniGene biog3_v1.0_unigene1170

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1169	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8S2N6_SELML	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	atp-binding cassette transporter	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	77%
Blast2go	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 123 - 443

Fln protein: MSRCQGVGSRYDVLTELSRREKQLGVKPDADVDVFMKATAIEGQETSVMTDYVLKILGLDICADTMVGDGMRRGISGGQKKRVTTGEMMVGGAKVFLMDEISTGLDSSTTYQIVRCFSQFVHI

Protein Length: 124

Fln nts: AATGTCTCGTTGCCAAGGCGTTGGTTCGAGATATGATGTGTTGACTGAGCTTTCCAGAAGAGAGAAACAACTAGGAGTGAAACCAGATGCCGATGTTGATGTTTTCATGAAGGCAACAGCAATAGAGGGACAAGAAACCAGTGTTATGACGGACTATGTTTTGAAGATATTGGGGTTAGACATATGCGCGGATACGATGGTAGGAGATGGTATGCGGCGGGGCATTTCTGGAGGTCAGAAGAAGAGAGTCACAACGGGGGAGATGATGGTGGGCGGTGCCAAAGTTTTTCTGATGGATGAAATTTCAACGGGGTTGGACAGTTCTACCACATATCAAATTGTCCGATGCTTCTCCCAGTTCGTTCATATAAT

Fln Alignment:

Contig1170___SRCQGVGSRYDVLTELSRREKQLGVKPDADVDVFMKATAIEGQETSVMTDYVLKILGLDICADTMVGDGMRRGISGGQKKRVTTGEMMVGGAKVFLMDEISTGLDSSTTYQIVRCFSQFVHI
B8LN70_________________ARCQGVGSRYDVLTELSRREKQLGVKPDSDIDVFMKATAIEGQETSVMTDYVLKILGLDICADTMVGDSMRRGISGGQKKRVTTGEMMVGGAKVFLMDEISTGLDSSTTFQIVRCFSQFVHV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
256	66			33	0.997452
257		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain