SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1132

Length: 196 nt

UniGene Fasta

>biog3_v1.0_unigene1132
ATATTTCAACATATCAAATCTAATAGCCACGGCTATTGGAGGCTTAGTTGTTATTGCAGCGATGGCCGAAGAAGTGGAGGAGGAGATGATGGCATTGGAAGCCATCTTCTATGACAGTTTCTCTAAGATAGATGACCGTCGTTTCAGGCTTAGAATTGATCCAAATCCGGGTAATGATGATAACCAGTGATCCGGG

Ace file of the UniGene biog3_v1.0_unigene1132

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22756	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to RWDD4A protein isoform 1 [Gallus gallus]	-	-	3.0e-19	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	rwd domain-containing protein 4-like	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	RWD domain	IPR006575	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A905

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 211 aas, your sequence is shorter than subject: 43 - 256

Fln protein: MAEEVEEEMMALEAIFYDSFSKIDDRRFRLRIDPNPGNDDNQ*

Protein Length: 44

Fln nts: ATATTTCAACATATCAAATCTAATAGCCACGGCTATTGGAGGCTTAGTTGTTATTGCAGCG_-_ATGGCCGAAGAAGTGGAGGAGGAGATGATGGCATTGGAAGCCATCTTCTATGACAGTTTCTCTAAGATAGATGACCGTCGTTTCAGGCTTAGAATTGATCCAAATCCGGGTAATGATGATAACCAGTGATCCGGG

Fln Alignment:

Contig1132___FYDSFSKIDDRRFRLRIDPNPGNDDN
D5A905_________________FYDSFSKIDDRRFRLRIDPNPGNEDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain