SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1131

Length: 1528 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1131

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16844	59/61
SustainPine v2.0	sp_v2.0_unigene26654	2/61

Source	Descriptions	Term	Type	Identity
AutoFact	succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	succinyl- ligase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Succinate--CoA ligase (ADP-forming).	EC:6.2.1.5	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	89%
Blast2go	Propanoate metabolism	00640	89%
Blast2go	C5-Branched dibasic acid metabolism	00660	89%
Blast2go	Carbon fixation pathways in prokaryotes	00720	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	succinyl-CoA metabolic process	GO:0006104	Biological Process	89%
Blast2go	succinate metabolic process	GO:0006105	Biological Process	89%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, succinyl-CoA synthetase-type	IPR013650	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase	IPR005811	-	-
Sma3	Succinyl-CoA synthetase, beta subunit, conserved site	IPR017866	-	-
Sma3	Succinyl-CoA synthetase, beta subunit	IPR005809	-	-
Sma3	Succinyl-CoA synthetase-like	IPR016102	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F9

Fln msg:

Fln protein: MARGLAGRLLTRAVTAIRSGQSWQQQQVRHLNIHEYQGSSLMSKYGVNVPKGIVVSSVAEVRQAIKDAFPEEKEVVVKSQILAGGRGLGTFKNGFEGGVHIAKIDEVEDIAGKMLGQILVTRQTGPGGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCRKGGTSIEDLAEKYPDMIIKVPIDIFEGITDEDAAKVVEGLAPTLADRDASIDQVKKLYGLFCETDCTLLEINPIAETVDGQLVAADAKLNFDDNAAYRQKEIFAFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGMTLITAENLDDAAEHAVIAAMRS*

Protein Length: 428

Fln nts: GGTCGAGAGGTTTTCTATATTTATACCCGGAGTCCACAGTGACTAGTTTTGATTACCTCCCTACGCCTCCCTGTCTAACGTTGCATTGCAGAGAGAGGCCTTCATAGGTCTGGGAATCCATTACATCTGTGTTTAAAAGAGCAGAAGAGAGAAA_-_ATGGCGAGAGGCTTGGCGGGTCGGCTGCTTACCAGGGCTGTTACAGCAATCAGATCGGGGCAATCGTGGCAGCAGCAGCAAGTCCGACATCTCAATATCCACGAATACCAGGGTTCAAGTCTGATGAGCAAATATGGAGTTAATGTTCCCAAAGGTATTGTTGTCTCTTCAGTTGCAGAAGTGAGGCAGGCCATCAAAGACGCGTTTCCTGAAGAGAAAGAGGTTGTTGTGAAAAGTCAAATACTTGCTGGTGGTCGAGGATTGGGAACATTTAAAAATGGGTTTGAAGGGGGTGTTCATATTGCCAAAATTGATGAAGTGGAGGACATTGCAGGGAAGATGCTAGGACAAATTCTTGTAACCAGACAGACTGGACCTGGAGGGAAACCGGTGAACAAGGTGTACATATGCCAGAAGTTGTCTCTCGCTAATGAAATGTACTTTGCCATTACCCTTGACCGTGTGTCTGCTGGTCCTGTTATAATTTCATGCAGAAAGGGTGGCACCAGTATTGAAGACCTTGCAGAAAAGTATCCTGACATGATAATCAAGGTTCCTATTGATATTTTCGAAGGAATAACAGATGAAGATGCTGCAAAAGTTGTCGAAGGTCTGGCCCCCACACTTGCTGATAGAGATGCATCAATAGATCAAGTAAAAAAGCTGTATGGTCTATTCTGTGAAACAGACTGTACACTTCTTGAGATCAATCCGATTGCAGAGACTGTTGATGGCCAATTAGTGGCTGCTGATGCAAAACTCAATTTTGATGACAATGCTGCGTATCGCCAGAAAGAGATTTTTGCTTTCCGTGATAAATCTCAAGAGGATCCAAGAGAGGTTTCTGCTGCTGAGGCTGACTTGAACTATATTGGATTGGATGGAGAAATAGGATGCATGGTTAATGGTGCAGGGTTGGCAATGGCAACCATGGATATCATAAAATTACATGGGGGAACTCCTGCCAATTTTCTTGATGTTGGAGGAAATGCTTCTGAAGGGCAGGTGGTGGAAGCATTTAAAATTTTGACTTCTGATGAAAAGGTCAAAGCAATTCTAGTCAACATTTTTGGAGGCATTATGAAATGTGATATCATTGCAAGTGGAATTGTAAATGCTGCAAAACAGGTTCAATTGAAGGTCCCTGTGGTGGTTCGTTTGGAAGGGACAAACGTTGATTTGGGTAAAAGCATTCTTAAGGAAAGTGGAATGACCTTGATTACTGCTGAAAACCTGGATGATGCAGCTGAACATGCTGTCATTGCAGCAATGAGATCCTGA___GTGGGTGGTATTTTTGATTTAATGAATGTGTGGGAAAGTGGAATGACCTTGATTACATTCTGAAAACCTGGATGATGCAGCTGAACATACATT

Fln Alignment:

Contig1131___MARGLAGRLLTRAVTAIRSGQSWQQQQVRHLNIHEYQGSSLMSKYGVNVPKGIVVSSVAEVRQAIKDAFPEEKEVVVKSQILAGGRGLGTFKNGFEGGVHIAKIDEVEDIAGKMLGQILVTRQTGPGGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCRKGGTSIEDLAEKYPDMIIKVPIDIFEGITDEDAAKVVEGLAPTLADRDASIDQVKKLYGLFCETDCTLLEINPIAETVDGQLVAADAKLNFDDNAAYRQKEIFAFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGMTLITAENLDDAAEHAVIAAMR
D5A8F9_________________MVRGSATRLLTRAVTAVRSGQSWQQQQVRHLNIHEYQGASLMSKYGVNVPKGIVVSSVAEVKQAIRDAFPGEKEVVVKSQVLAGGRGLGTFKNGFEGGVHIAKIDEAEDIAAKMLGQILITRQTGPEGKPVNKVYICQKLSLANEMYFAITLDRVSAGPVIISCSKGGTSIEDLAEKYPDMIIKVPIDIFKGITDEDAAKVVEGLAPRLADRDASIDQIKKLYGLFRETDCTLLEINPIAETVDGQLVAADAKMNFDDNAAYRQKDIFSFRDKSQEDPREVSAAEADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGLALITAENLDDAAGNAVIAAAK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
391	66			33	0.997452
465	66	33			0.997452
480	25		75		0.996473
481			75	25	0.996473
482	75		25		0.996473
483		75		25	0.996473
625	12		87		0.992554
628			87	12	0.992554
636	12			87	0.992554
639	87			12	0.992554
676	12	87			0.992554
677	12			87	0.992554
680		87		12	0.992554
686	88			11	0.923564
705		88		11	0.923564
725	14			85	0.993533
729	85			14	0.993533
730			88	11	0.923564
1076	12		87		0.992554
1079	87			12	0.992554
1149		85		14	0.993533
1299	12			87	0.992554
1301	12	87			0.992554
1302		87		12	0.992554
1465		25		75	0.996473
1466	25		75		0.996473
1498			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
223	234	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain