SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1099

Length: 398 nt

UniGene Fasta

>biog3_v1.0_unigene1099
AATGTTGCAAAAAATATGATGAGGCTACGAGGCTTTGTCCTACTTTACATGATGCATTTTATAATTGGGCAATTGCAATATCTGATCGGGCTAAGATGAGAGGCCGTACAAAAGAAGCTGAAGAACTTTGGAAGCAAGCAACCAAAAACTATGAAAAAGCTGTTCAGCTCAATTGGAATAGCCCTCAGGCACTTAATAATTGGGGGCTTGCGTTGCAGGAGCTGAGTGCTATTGTTCCTGCACGAGAAAAACAGACAATTGTTAGAACAGCTGTAAGCAAGTTCCGGGCAGCAATTCAACTGCAGTTTGATTTTCATAGAGCTATTTATAACTTGGGGACTGTACTGTATGGTTTAGCAGAAGATAGTTTAAGAAGTGGGCGCCAAATCAGTGACATT

Ace file of the UniGene biog3_v1.0_unigene1099

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1209	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] dbj\|BAB08428.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM62783.1\| unknown [Arabidopsis thaliana] gb\|AAM91551.1\| putative protein [Arabidopsis thaliana] gb\|ABO38758.1\| At	-	-	62%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	96%
Blast2go	binding protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein import into mitochondrial outer membrane	GO:0045040	Biological Process	0.0	77%
Blast2go	mitochondrial outer membrane translocase complex	GO:0005742	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GY29

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 132 - 380

Fln protein: CCKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAVSKFRAAIQLQFDFHRAIYNLGTVLYGLAEDSLRSGRQISDI

Protein Length: 133

Fln nts: AATGTTGCAAAAAATATGATGAGGCTACGAGGCTTTGTCCTACTTTACATGATGCATTTTATAATTGGGCAATTGCAATATCTGATCGGGCTAAGATGAGAGGCCGTACAAAAGAAGCTGAAGAACTTTGGAAGCAAGCAACCAAAAACTATGAAAAAGCTGTTCAGCTCAATTGGAATAGCCCTCAGGCACTTAATAATTGGGGGCTTGCGTTGCAGGAGCTGAGTGCTATTGTTCCTGCACGAGAAAAACAGACAATTGTTAGAACAGCTGTAAGCAAGTTCCGGGCAGCAATTCAACTGCAGTTTGATTTTCATAGAGCTATTTATAACTTGGGGACTGTACTGTATGGTTTAGCAGAAGATAGTTTAAGAAGTGGGCGCCAAATCAGTGACATT

Fln Alignment:

Contig1099___CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAVSKFRAAIQLQFDFHRAIYNLGTVLYGLAEDSLRSG
B9GY29_________________CKKYDEATRLCPTLNDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain