SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1096

Length: 1060 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1096 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18353	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	Aldehyde dehydrogenase [Medicago truncatula]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	aldehyde dehydrogenase 22a1	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Y0

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 353 - 596

Fln protein: MSIVPWNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKP

Protein Length: 354

Fln nts: AATGTCCATTGTTCCTTGGAATTATCCTTTCCATAATATTTTTAATCCGATGTTAGCAGCTGTTTTTTCTGGGAATGGTATCGTAATCAAGGTGTCAGAGCATGCAAGTTGGTCTGGTTGCTTCTATTTTCGGATTATTCAAGCTGGACTTTTGGCAGCAGGAGCACCTTCAGATCTGGTTCATGTGATAACAGGTTTTGGTGAAACTGGAGAAGCACTTGTCTCATCTGTTGACAAAGTGATATTTGTTGGATCTACTGCTGTTGGTAAGATGGTCATGGAAAATGCATCAAAGACATTAACCCCAGTAACACTTGAACTTGGTGGAAAAGATGCATTCATTGTTTGTGATGATGTGGATGTTCCTCATGTTGCACAAATAGCTGTCAGGGCTGCTCTACAATCAAGTGGGCAGAACTGTGCTGGTGCTGAGAGGTTTTATGTGCATCAAGATGTCTATGATTCTTTTAAGGCTCAAGTTATCAAGATTGTGAAATCTGTGCGTGTGGGGCCTCCTTTAGAGGCAAGGTATGATATGGGAGCAATCTGTTTACAAGAGCATGCTGATAAACTTCAAAGTCTTGTGAATGATGCTTTGGAGAAAGGTGCTGAGATAGCAGTCAGAGGAAAGTTATTTTTTGGAAGTCTGGGAGATGACGTGGTTGGTCAATTCTACCCACCTACAGTAATACTTAATGTGAATCATTCAATGCATTTGATGCAAGAGGAGATATTTGGACCAATCATTGCAATCATGAAGTTCAGCTCTGATGAGGAGGCTATAATGCTGGCAAATGATACAAACTATGGACTTGGCTGTGCTGTATTCTCTGGAAGCCAGCGTCGGGCAAGATCAATAGCATCGAGGATATACTGTGGATTTGCTGTCATTAATGACTTTGCTTCTAGCTATATGTGCCAGTCATTGCCATTTGGTGGAGTGAAGAATAGTGGATTTGGAAGATTTGCTGGTGTTGAAGGTCTTCGTGCATGCTGTCTTATCAAAGCCGTTGTAGAGGATAGATGGTGGCCGTACATCAAGACCAAGATTCCAAAGCCA

Fln Alignment:

Contig1096___SIVPWNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQXXXXXXXXXIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKP
D5A7Y0_________________AIVPWNYPFHNIFNPMLAAVFSGNAIVIKVSEHASWSGCFYFRIIQAGLLAAGAPSDLVHVITGFGETGEALVSSVDKVIFVGSTAVGKMVMENASKTLTPVTLELGGKDAFIVCDDVDVPHVAQIAVRAALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEGRYDMGAVCLQEHADKLQSLVNDALEKGAEIAVRGKLFFGSLGDDVVGQFYPPTVILNVNHSMRLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
174		33	33	33	0.997753
175	66			33	0.997452
470			66	33	0.997452
471		66	33		0.997452
472	66			33	0.997452
514	75			25	0.996473
515		75	25		0.996473
516	75			25	0.996473
566	20		80		0.995493
569			20	80	0.995493
963	25		75		0.996473
965	75		25		0.996473
967			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain