SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1088

Length: 253 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1088
TCTCGTCCTTCAAGAATTTGTGAACCACGGGGGCGCGATCTTTAAGGTGTATGTTGTTGAAGATTTTGTCAAGTGTGTGAAGAGAACGTCTTTGCCCGACGTCCCTGACGAGGAGATACAGAGCTCTTCTGAAGGTTATATGACATTTTCCCAAATATCAAACATGTCATCCGAGAAATATGATGAAAATTCTGACCTCGAACAGGGTGACCTTCCACCCTCGAGATTCATACAGGATCTTGCGAATGACATT

Ace file of the UniGene biog3_v1.0_unigene1088 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2341	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	inositol phosphate kinase [Hordeum vulgare]	-	-	53%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	inositol phosphate kinase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-tetrakisphosphate 1-kinase.	EC:2.7.1.134	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Inositol phosphate metabolism	00562		0.0	73%
Blast2go	Inositol-1,3,4-trisphosphate 5/6-kinase.	EC:2.7.1.159	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Phosphatidylinositol signaling system	04070	73%

Source	GOs	Term	Type	Identity
Blast2go	inositol trisphosphate metabolic process	GO:0032957	Biological Process	73%
Blast2go	inositol tetrakisphosphate 1-kinase activity	GO:0047325	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	73%
Blast2go	inositol-1,3,4-trisphosphate 5/6-kinase activity	GO:0035300	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SBA5

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 84 - 319

Fln protein: LVLQEFVNHGGAIFKVYVVEDFVKCVKRTSLPDVPDEEIQSSSEGYMTFSQISNMSSEKYDENSDLEQGDLPPSRFIQDLANDI

Protein Length: 85

Fln nts: TCTCGTCCTTCAAGAATTTGTGAACCACGGGGGCGCGATCTTTAAGGTGTATGTTGTTGAAGATTTTGTCAAGTGTGTGAAGAGAACGTCTTTGCCCGACGTCCCTGACGAGGAGATACAGAGCTCTTCTGAAGGTTATATGACATTTTCCCAAATATCAAACATGTCATCCGAGAAATATGATGAAAATTCTGACCTCGAACAGGGTGACCTTCCACCCTCGAGATTCATACAGGATCTTGCGAATGACATT

Fln Alignment:

Contig1088___LVLQEFVNHGGAIFKVYVVEDFVKCVKRTSLPDVPDEEIQSSSEGYMTFSQISNMSSE-----KYDENSDLEQGDLPPSRFIQDLA
Q9SBA5_________________IVLQEFVNHGGVIFKVYVVGDHVKCVKRRSLPDISEEKI-GTSKGSLPFSQISNLTAQEDKNIEYGEDRSLEKVEMPPLSFLTDLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain