SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1082

Length: 1641 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1082

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20792	5/6
SustainPine v2.0	sp_v2.0_unigene47820	1/6

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein phosphatase 2c	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	87%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	87%
Blast2go	interspecies interaction between organisms	GO:0044419	Biological Process	87%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG*

Protein Length: 283

Fln nts: CAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGCCTAAGAAATCCTTTTAAAGACTGGAAGATCACGTTAATCTGGCCTTTCTCTGCAAAATATTGGCTACAAAGATGATATTCAACTCCGTCAGCTACGTTGATTGCCTTGCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATC_-_ATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAA___CAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAA

Fln Alignment:

Contig1082___MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG
A9NWY3_________________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSHG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
382	20		80		0.995493
383		20	80		0.995493
385		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain