SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1062

Length: 324 nt

UniGene Fasta

>biog3_v1.0_unigene1062
TGGTGCCCTATTTCAAGTGGAAAGAGGACCTAAAGGTCTATATCTTTCACGCATAACGGCTGCTTCCGCAAAAAAGACAAGTCTACAGGATAATGAAGATCAGAATGATCATGAGAAAGCCGATAATAAAGACAATAGAGCATTGGTTGATAACAACACAGCTCAAAACCTCTCTTCTGAAGAGATACTCCAAATGCGCAGGGAGGGCATATCAGGTGAACAGATTGTTGAAGCACTTATAGCCAACAGTGCAACTTTCCAAAACAAAACTGCATTTTCCCAGGAGAAGTATAAACGCAAGAAGCAGAAGAAATATGTTACATT

Ace file of the UniGene biog3_v1.0_unigene1062

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10210	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-3 subunit P62 [Arabidopsis thaliana] gb\|AAC28552.1\| expressed protein [Arabidopsis thaliana] gb\|AAL38275.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91144.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10593.1\| trans	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	trna (adenine-n -)-methyltransferase non-catalytic subunit trm6-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	regulation of translational initiation	GO:0006446	Biological Process	73%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	73%
Blast2go	transferase activity	GO:0016740	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Eukaryotic initiation factor 3, gamma subunit	IPR007316	-	-
Sma3	tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit	IPR017423	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E0CQ45

Fln msg: Distance to subject end: 298 aas, your sequence is shorter than subject: 107 - 464

Fln protein: GALFQVERGPKGLYLSRITAASAKKTSLQDNEDQNDHEKADNKDNRALVDNNTAQNLSSEEILQMRREGISGEQIVEALIANSATFQNKTAFSQEKYKRKKQKKYVT

Protein Length: 108

Fln nts: TGGTGCCCTATTTCAAGTGGAAAGAGGACCTAAAGGTCTATATCTTTCACGCATAACGGCTGCTTCCGCAAAAAAGACAAGTCTACAGGATAATGAAGATCAGAATGATCATGAGAAAGCCGATAATAAAGACAATAGAGCATTGGTTGATAACAACACAGCTCAAAACCTCTCTTCTGAAGAGATACTCCAAATGCGCAGGGAGGGCATATCAGGTGAACAGATTGTTGAAGCACTTATAGCCAACAGTGCAACTTTCCAAAACAAAACTGCATTTTCCCAGGAGAAGTATAAACGCAAGAAGCAGAAGAAATATGTTACATT

Fln Alignment:

Contig1062___GALFQVERGPKGLYLSRITAASAKKTSLQDNEDQNDHEKADNKDNRALVDNNTAQNLSSEEILQMRREGISGEQIVEALIANSATFQNKTAFSQE
E0CQ45_________________GSLFQVDNGPRGPYLSRVTP-SAEGNDLQETQDCQ--LKDEPKDNRAIVDNNKAQSLTGEDIDEMRRQGATGDEIVEALISNSATYEKKTSFSQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain