SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1045

Length: 1096 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1045 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene428	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	putative cyclin-dependent kinase E1 [Arabidopsis thaliana] dbj\|BAF00561.1\| cdc2-like protein kinase like protein [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	cyclin-dependent kinase e-1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
156	50		50		1.0
324	16			83	0.994512
327	83			16	0.994512
401	33	66			0.997452
403		66		33	0.997452
404	66		33		0.997452
456	20			80	0.995493
458			20	80	0.995493
461		20	80		0.995493
462	20			80	0.995493
463		20	80		0.995493
464	20		80		0.995493
467	20		80		0.995493
468	20			80	0.995493
470			80	20	0.995493
471	80			20	0.995493
472		20		80	0.995493
716	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
458	469	TGG TGG TGG TGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain