SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1031

Length: 1617 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1031

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6912	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=UPI0001621F83	-	-	82%
FL-Next	sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	dna topoisomerase 6 subunit a-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	epidermal cell fate specification	GO:0009957	Biological Process	82%
Blast2go	DNA topological change	GO:0006265	Biological Process	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	82%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	chromosome	GO:0005694	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Spo11/DNA topoisomerase VI, subunit A	IPR002815	-	-
Sma3	Spo11/DNA topoisomerase VI, subunit A, N-terminal	IPR013049	-	-
Sma3	DNA topoisomerase VI, subunit A	IPR004085	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LZ03

Fln msg:

Fln protein: MADKKRKRSEMGEENDEVSARNDQSRAALAFKKRLKPDGVILASIEEFSEAAQGQKPETRTLADLNLPHACREVIDLDGGAVEHEIEKTILQVARSILAGNGFGFSVPARGNANQLYVPELDRIVLKDKSSFRQFANVSSVRKTAITTRILQLVHQLCMKQIHVTKRDLFYTDVKLFQDQGQSDGVLDDVSCMLGCTRSSLNVVASEKGVVVGRLIFSDNGDRIDCTKMGVGGKAIPPNIDRVGDMESDALFILLVEKDAAFMRLAEDRFYNRFPCVIITAKGQPDVATRLFLKKMKTELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSSNLTTPDIKWLGIRPSDLDKYHIPEQCRLPMTDQDIKTGKDLLEEDFVKKSPGWVDELNLMVKTKHKAEIQALSSFGFQYLSEVYLPLKLQQRDWI*

Protein Length: 430

Fln nts: CCCTCCGCCTTCATTTTAGGGAGAAAGCGTCACACAATATCCTCAGACAAGAAGGTTACACAAAACCCCAACAAGAATAGCAGATCGAATACCCCTACTACATTTTAGAGAGCAAAACGGGACACAAAACCCCTACCCCAATCCCAATCAAGAATAGCAAACAAATACCTTCATTTTAGGGAAAAAGCGTCACACAATATCCTAAGGCAGAATAACGCTCAGCAATCTTAAGCTCCGCCTTTGTTTGTGGCC_-_ATGGCGGACAAGAAGCGAAAGCGCTCAGAAATGGGCGAAGAAAATGACGAGGTGTCGGCTCGTAACGATCAGTCGAGGGCGGCTCTGGCCTTCAAGAAGCGCCTGAAGCCGGACGGCGTGATCCTGGCCTCCATCGAGGAGTTCTCTGAGGCGGCCCAGGGTCAGAAGCCGGAGACTCGAACCCTGGCCGACCTCAACCTCCCGCACGCCTGTCGCGAGGTCATCGACTTGGACGGAGGCGCCGTGGAGCACGAGATCGAGAAGACTATCCTCCAGGTCGCGCGTTCGATTCTCGCCGGCAACGGTTTTGGATTTAGCGTCCCCGCCCGCGGTAACGCCAACCAGCTTTACGTACCGGAGCTGGACCGCATCGTTCTCAAGGACAAGTCCTCCTTTCGCCAGTTCGCCAACGTCTCCAGCGTCAGGAAGACTGCCATTACCACCAGGATTCTCCAGCTTGTTCACCAGCTCTGCATGAAGCAAATCCATGTCACGAAGCGTGACCTTTTCTACACCGACGTGAAGCTCTTCCAGGACCAGGGTCAGTCTGATGGCGTCCTCGACGATGTTTCTTGCATGCTCGGCTGCACCAGGTCGAGTCTCAATGTCGTGGCCTCCGAAAAAGGCGTCGTTGTTGGCCGCCTCATCTTTTCCGACAACGGCGACCGGATCGACTGTACGAAGATGGGCGTCGGAGGCAAGGCCATACCGCCGAACATCGACCGTGTCGGCGACATGGAGAGCGACGCCCTCTTCATTCTCCTCGTCGAAAAGGATGCCGCCTTTATGAGGCTCGCAGAAGACCGCTTCTATAATCGGTTTCCCTGCGTCATAATTACTGCCAAGGGCCAGCCGGATGTCGCCACCAGACTGTTTTTGAAGAAGATGAAGACCGAGTTGAAGCTCCCGGTTCTTGCCCTGGTCGACAGCGATCCCTACGGTTTAAAGATCCTCTCGGTTTACATGTGTGGGTCCAAGAATATGTCGTACGACAGTTCGAATCTCACCACCCCTGATATCAAGTGGCTGGGGATTCGACCCTCCGATCTGGACAAGTACCATATTCCCGAGCAGTGCCGGTTGCCCATGACGGATCAGGATATTAAGACGGGGAAGGACTTGCTGGAGGAGGATTTTGTGAAGAAGAGTCCTGGGTGGGTGGATGAGTTGAATTTGATGGTGAAGACTAAACATAAGGCAGAAATTCAGGCATTGAGTTCTTTTGGGTTTCAGTACCTTTCGGAGGTTTATCTGCCTCTGAAGCTGCAACAGAGAGACTGGATATGA___TGATTGCCGGATACAGTACCATCCCTTATTAACACATTTTACATGCGTGGTAAGCTCTGGCATTGAAAATAGGACATT

Fln Alignment:

Contig1031___MADKKRKRSEMGEENDEVSARNDQSRAALAFKKRLKPDGVILASIEEFSEA----------AQGQKPETRTLADLNLPHACREVIDLDGGAVEHEIEKTILQVARSILAGNGFGFSVPARGNANQLYVPELDRIVLKDKSSFRQFANVSSVRKTAITTRILQLVHQLCMKQIHVTKRDLFYTDVKLFQDQGQSDGVLDDVSCMLGCTRSSLNVVASEKGVVVGRLIFSDNGDRIDCTKMGVGGKAIPPNIDRVGDMESDALFILLVEKDAAFMRLAEDRFYNRFPCVIITAKGQPDVATRLFLKKMKTELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSSNLTTPDIKWLGIRPSDLDKYHIPEQCRLPMTDQDIKTGKDLLEEDFVKKSPGWVDELNLMVKTKHKAEIQALSSFGFQYLSEVYLPLKLQQRDWI
Q9LZ03_________________MADKKKRKRSKDDEAEE-----------LPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKPLTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
272	66			33	0.997452
505		85		14	0.993533
622	14	85			0.993533
625		85		14	0.993533
633	85		14		0.993533
640	12		87		0.992554
643		87	12		0.992554
666	11			88	0.923564
667	11	88			0.923564
669		88	11		0.923564
670		88		11	0.923564
702			11	88	0.923564
703	11			88	0.923564
706		88		11	0.923564
716	11	88			0.923564
718		88	11		0.923564
852	12		87		0.992554
854		87	12		0.992554
881	12		87		0.992554
882	12			87	0.992554
883		87		12	0.992554
945	11			88	0.923564
946	11	88			0.923564
947			88	11	0.923564
949	88			11	0.923564
1026	88			11	0.923564
1129	28			71	1.0
1130	14			85	0.993533
1134	83			16	0.994512
1144			83	16	0.994512
1145	83			16	0.994512
1212		33	66		0.997452
1213	33			66	0.997452
1457	80	20			0.995493
1464	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain