SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1006

Length: 528 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1006
AATGTCCTCGACCCTACAAGATTCCTCTTGGGACTGTGGGAGTAATTTTAATGTGCATTCCTCCTTCCGCGCTGTTATGTGTGGTGTTGGCAATTGCATCCTTAAAAGTCATGATTGTCAGCATCACTGCTGTTCTCATTGGCTTCCTCTTTTATCCAGGCCTTGAATACTTGAAAACAGAATTGGATGAGGTTTTCCAGTAGTCCAAGTCTTCCTGAGAATATAGAGCGTCGATGTGTTGCTGCCTGTGCGGACCAAATGTGGACGGAGCTTCTGAGCATTTGTTAGGACATGGGGAGTAGGCATGCCTGCAATTCCTGCCCTAGTACATGTAAGTCCAAGTTGTTAGATGTTTAAAATAAATACTTGATTTTACTGATCTGGCTGCTAGTCCTTATGCTTACATCATTTAATATAGCTTGGTGCCATGCTGATTCTTAAGGACGGGATCCATGCCCTCATAGCCACATCTTCCTGGTGGTATGTTTCCTGTTATAGACTAAACAAAGACAATTCATTGATTCTTAT

Ace file of the UniGene biog3_v1.0_unigene1006 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26765	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9S1L4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	amino acid permease-like protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 47 aas, putative chimeric sequence, your sequence is shorter than subject: 67 - 502

Fln protein: CPRPYKIPLGTVGVILMCIPPSALLCVVLAIASLKVMIVSITAVLIGFLFYPGLEYLKTELDEVFQ*

Protein Length: 68

Fln nts: AATGTCCTCGACCCTACAAGATTCCTCTTGGGACTGTGGGAGTAATTTTAATGTGCATTCCTCCTTCCGCGCTGTTATGTGTGGTGTTGGCAATTGCATCCTTAAAAGTCATGATTGTCAGCATCACTGCTGTTCTCATTGGCTTCCTCTTTTATCCAGGCCTTGAATACTTGAAAACAGAATTGGATGAGGTTTTCCAGTAG___TCCAAGTCTTCCTGAGAATATAGAGCGTCGATGTGTTGCTGCCTGTGCGGACCAAATGTGGACGGAGCTTCTGAGCATTTGTTAGGACATGGGGAGTAGGCATGCCTGCAATTCCTGCCCTAGTACATGTAAGTCCAAGTTGTTAGATGTTTAAAATAAATACTTGATTTTACTGATCTGGCTGCTAGTCCTTATGCTTACATCATTTAATATAGCTTGGTGCCATGCTGATTCTTAAGGACGGGATCCATGCCCTCATAGCCACATCTTCCTGGTGGTATGTTTCCTGTTATAGACTAAACAAAGACAATTCATTGATTCTTAT

Fln Alignment:

Contig1006___RPYKIPLGTVGVILMCIPPSALLCVVLAIASLKVMIVSITAVLIGFLFYPGLEYLK
B8LPK8_________________RPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTLIVSSTVVIVGFLLYPCIGYMK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
131		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain