SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene975

Length: 1058 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene975

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13674	12/20
SustainPine v2.0	sp_v2.0_unigene16697	2/20
SustainPine v2.0	sp_v2.0_unigene33093	6/20

Source	Descriptions	Term	Type	Identity
AutoFact	MAP kinase-like protein n=1 Tax=Gossypium hirsutum RepID=Q7Y236_GOSHI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	map kinase-like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	0.0	-
Sma3		IPR017442	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NY57

Fln msg:

Fln protein: MCLFSLSFIGRKGKMPGVEYDASDKDREPFVEVDPTGRYGRYEDVLGRGAMKTVYRAFDQADGIEVAWNKVSLQNLDNVSIERIYSEVRLLKSLRNENIIMFYNAWLDRKTGHVNFITEVCTSGTLRQYRQKHRHVSMKAVKNWARQILDGLHYLHSHMPCIIHRDLNCSNIFVNGNTGILKIGDLGLAATLENDHAAHTIIGTPEFMAPELYEEHYNELVDVYSFGMCLLEMVTLEIPYSECRSVAQIYEKVSSGIRPAALEKVTNQEVRQFIEKCLAVTSARPSAAELLKDPFLSEVHSSS*

Protein Length: 305

Fln nts: A_-_ATGTGTTTATTTTCCCTGTCCTTTATAGGAAGAAAAGGAAAAATGCCTGGTGTAGAATATGACGCCAGTGATAAGGACAGGGAACCCTTTGTGGAAGTGGATCCCACTGGCAGGTATGGTCGCTATGAAGATGTGTTGGGTCGTGGTGCCATGAAGACGGTATACAGAGCTTTTGATCAGGCAGATGGTATTGAGGTTGCTTGGAACAAGGTGTCTCTGCAAAATCTTGATAATGTTTCCATTGAGAGGATCTATTCAGAAGTCCGTCTGTTGAAGTCTCTCAGGAATGAAAACATCATTATGTTCTACAATGCCTGGTTGGATAGAAAAACAGGGCACGTGAATTTCATTACTGAAGTTTGCACCTCGGGTACCCTGAGGCAGTACCGTCAGAAGCACCGGCATGTCTCCATGAAGGCCGTGAAGAACTGGGCACGCCAGATACTGGATGGATTGCATTATCTGCATAGTCATATGCCTTGCATAATTCACAGAGATTTGAATTGCAGCAACATTTTCGTGAATGGCAATACTGGCATTCTTAAGATTGGGGATCTGGGTCTTGCTGCTACCCTGGAAAATGATCATGCTGCACACACTATTATTGGTACACCAGAATTCATGGCCCCGGAATTATATGAAGAGCATTACAATGAGCTTGTCGATGTTTATTCCTTTGGCATGTGCTTGCTGGAGATGGTTACTCTGGAGATTCCTTACAGTGAGTGCCGTAGCGTTGCTCAAATTTATGAGAAGGTGAGTTCTGGTATAAGGCCTGCAGCACTGGAAAAAGTTACCAATCAAGAAGTGAGGCAATTTATTGAAAAATGTCTGGCAGTTACATCGGCAAGGCCTTCTGCTGCCGAACTTCTGAAGGACCCATTTCTCAGCGAAGTACATTCGAGTAGCTAG___TACATATGCATGTTTGAGTGCTCAATTATTTTAAGATTAAATTGGGGGTTTCTGCCAGCGTCTGTAGGAACTGTTGGTGGAAATATGTGATGCCAAATGCTAGGAAAAAATATTTAGATATTATTGCATGTATCTGTGGGACATT

Fln Alignment:

Contig975___MPGVEYDASDKDREPFVEVDPTGRYGRYEDVLGRGAMKTVYRAFDQADGIEVAWNKVSLQNLDNVSIERIYSEVRLLKSLRNENIIMFYNAWLDRKTGHVNFITEVCTSGTLRQYRQKHRHVSMKAVKNWARQILDGLHYLHSHMPCIIHRDLNCSNIFVNGNTGILKIGDLGLAATLENDHAAHTIIGTPEFMAPELYEEHYNELVDVYSFGMCLLEMVTLEIPYSECRSVAQIYEKVSSGIRPAALEKVTNQEVRQFIEKCLAVTSARPSAAELLKDPFLSEV
A9NY57________________MPGVEYDASDKDREPFVEMDPTVRYGRYEDVLGRGCMKTVYRAFDQEDGIEVAWNKVSLQNLDDISIQRIYSEIRLLKSLRNENIITLYNAWLDKKTGHVNFITEVCTSGTLRQYRQKHRHVSMKAVKNWARQILGGLHYLHNHMPCIIHRDLNCSNIFVNGNTGILKIGDLGLAVTVGNDHAAHTIIGTPEFMAPELYEEDYNELIDVYSFGMCLLEMVTLEIPYSECRSITQIYKKVSSGIRPAALEKVTNQETRRFIEKCLALTSVRPSAAELLMDPFFRGV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
183	16	83			0.994512
213		22		77	0.999999
233	75		25		1.0
313	80			20	0.995493
870	20	80			0.995493
907	20			80	0.995493
937		20	80		0.995493
948		20		80	0.995493
949	25			75	0.996473
958	33		66		0.997452
959	66	33			0.997452
960	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain