SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene973

Length: 1978 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene973
AATGTACTGAAGAGTCATGTGCTCCAGCGATAGAAGCCCCATCGGAACCCCAGGCCTCGGATAGTCACGGGGAAGCTAAAGAAAGGGCGACTGTGGTGTTTAAGCCACTGGCAAAGTTGGGGACGATGAACCCAGCCCTCTCATCCCTTGCAAATCTTGGTTCATTTGGGATTTCTCATCAGCAAGCACTGGCTCAGGTTCAGGCTCAAGCTCGAGCTCAGGCTCAGGTGCAATCCCAGCCTGTTTCTTCGCCCATGCCTGTATCATCGGCAGCAACAACATTTCCAGTTCATCAGGTTTCATCTTCTGCAGCATTGACTCCGACTTCTCTGTCTAGTGCACCTGGGTTTAATGCTTATTATGTTCAGCAAAAGGTGTCACTGAAGTCAGAAACTAAGCAAGCAATTGAGTCTCCAAATCCAGTTCCACAGAATACAGAGCAAATTCAACGATCTTTGCCTCCTATTCCTATAGCAGATAGGCCCTCTTTTGATGGGTATAATTGGCGGAAGTATGGCCAGAAGCAGGTCAAGGGTAGTGAATATCCCCGTAGCTATTATAAATGTACTCATCCCAATTGCCCTGTGAAGAAAAAGGTTGAACGGTCTCATGATGGGCAGATAACTGAAATAGTTTACAAAGGTGAGCACAGTCATTTGAAACCTCAACCTACAAGACGCTTGCCTACTGGTAGTACACAGAACCCTAATGGCTTGGATGTAAATGGGCGAGAGATGGAGTCCCCCAGAGGTGAAAAGAATGAGTACTTTGATGTAAATGCAGATCAATCTAGTCCAGGATTTTTTGCAGATCCAGGTGGCAGGACTGAAAGGTTAGCATTAACAAATGTTTCAGATCCCTCAACTCCAGCCAGGGGAGTTAACTATGGGAATGGAAGCCCTGACCTGTCACCTTGTCTAAGTGATGATGGTGAGGGTGCAAATAGAGCAGATGATGAAGATGACGATGAACCTGTTTCTAAGCGCAGGAAGAAAGACAAGAAATTAAAGGATTTGCTTGCTCCAGAAAGGTCAAGTCGCGAGCCTCGTGTTGTTGTGCAGACAAGCGATGCAGATATTCTGGAAGATGGTTTTCGCTGGCGGAAATATGGACAGAAAGTGGTTAAGGGAAACCCTTACCCGAGGAGTTACTACAAGTGCACCAGCTTGAAATGCGCTGTCCGCAAACATGTGGAAAGGGCATCTGATGATCCTAAAGCTGTTATAACAACTTATGAGGGAAAGCACAACCATGATCCACCTTTGGCAAGAAACAGCAACCAAGATGCTGCCGGCATTAGTTCCCCGGGTCTGAGTGGAAATGGTGCTAATGCAGCACAAGACAAACAGATTCAAAACAGGCTGACTTCTTTTGCAAAAGTTTCACAGGGTGCAGCTGAAGGAGAAGATAGAATGCATGCTGGAGAAGTTGGAGGTGTAAAGCTGATGAGAAATAACAGGCAAAGTGATGTTGAAGATATTGAAAGGGAGGGCTCTTGGCAGTGATGATAATTTTGTTGTTTGAAAAACAGCTGCAATGCTTTGGGAGTGATGCAGAAGGAAGACCATGAACTGACTTCATAGAATAACTAGTTATGTCAAAGCATTTGCCAGAAGTTATGAGATGTTTTATAATCACGTCATTGGATAGTCAATTCGGAAGATTTCAAATGCTGCGTAAATGTACTATGATGCTTTCTGATGCACCTACGGACATTCTTTCTCCACCTGTGCCTACACAAAAACAGAGATATGCTGCTGCTGAGTTCCCGATTTGAAAGTGCAACAATGACATCACCAGTACTGATTTGAACAATAGGCAAATGTTATAACATGGAGTAAATCCAAAATCACATGTTGTAAAGGTTACATAATTATTAGTGTTGCTTGCATATAATCTCTGAGTATGGGCAGGAGCTTAAATTTAAACTGCTGGGGGAAAATGTGGGGCTATAGACTTGTCCCTGCCATGTGACATT

Ace file of the UniGene biog3_v1.0_unigene973 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10137	34/34

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor PmWRKY119 (Fragment) n=4 Tax=Pinaceae RepID=E6Y3F1_PINMO	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	wrky transcription factor	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	70%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	70%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-binding WRKY	IPR003657	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI1

Fln msg: your sequence is shorter than subject: 501 - 620

Fln protein: CTEESCAPAIEAPSEPQASDSHGEAKERATVVFKPLAKLGTMNPALSSLANLGSFGISHQQALAQVQAQARAQAQVQSQPVSSPMPVSSAATTFPVHQVSSSAALTPTSLSSAPGFNAYYVQQKVSLKSETKQAIESPNPVPQNTEQIQRSLPPIPIADRPSFDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHDGQITEIVYKGEHSHLKPQPTRRLPTGSTQNPNGLDVNGREMESPRGEKNEYFDVNADQSSPGFFADPGGRTERLALTNVSDPSTPARGVNYGNGSPDLSPCLSDDGEGANRADDEDDDEPVSKRRKKDKKLKDLLAPERSSREPRVVVQTSDADILEDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCAVRKHVERASDDPKAVITTYEGKHNHDPPLARNSNQDAAGISSPGLSGNGANAAQDKQIQNRLTSFAKVSQGAAEGEDRMHAGEVGGVKLMRNNRQSDVEDIEREGSWQ*

Protein Length: 502

Fln nts: AATGTACTGAAGAGTCATGTGCTCCAGCGATAGAAGCCCCATCGGAACCCCAGGCCTCGGATAGTCACGGGGAAGCTAAAGAAAGGGCGACTGTGGTGTTTAAGCCACTGGCAAAGTTGGGGACGATGAACCCAGCCCTCTCATCCCTTGCAAATCTTGGTTCATTTGGGATTTCTCATCAGCAAGCACTGGCTCAGGTTCAGGCTCAAGCTCGAGCTCAGGCTCAGGTGCAATCCCAGCCTGTTTCTTCGCCCATGCCTGTATCATCGGCAGCAACAACATTTCCAGTTCATCAGGTTTCATCTTCTGCAGCATTGACTCCGACTTCTCTGTCTAGTGCACCTGGGTTTAATGCTTATTATGTTCAGCAAAAGGTGTCACTGAAGTCAGAAACTAAGCAAGCAATTGAGTCTCCAAATCCAGTTCCACAGAATACAGAGCAAATTCAACGATCTTTGCCTCCTATTCCTATAGCAGATAGGCCCTCTTTTGATGGGTATAATTGGCGGAAGTATGGCCAGAAGCAGGTCAAGGGTAGTGAATATCCCCGTAGCTATTATAAATGTACTCATCCCAATTGCCCTGTGAAGAAAAAGGTTGAACGGTCTCATGATGGGCAGATAACTGAAATAGTTTACAAAGGTGAGCACAGTCATTTGAAACCTCAACCTACAAGACGCTTGCCTACTGGTAGTACACAGAACCCTAATGGCTTGGATGTAAATGGGCGAGAGATGGAGTCCCCCAGAGGTGAAAAGAATGAGTACTTTGATGTAAATGCAGATCAATCTAGTCCAGGATTTTTTGCAGATCCAGGTGGCAGGACTGAAAGGTTAGCATTAACAAATGTTTCAGATCCCTCAACTCCAGCCAGGGGAGTTAACTATGGGAATGGAAGCCCTGACCTGTCACCTTGTCTAAGTGATGATGGTGAGGGTGCAAATAGAGCAGATGATGAAGATGACGATGAACCTGTTTCTAAGCGCAGGAAGAAAGACAAGAAATTAAAGGATTTGCTTGCTCCAGAAAGGTCAAGTCGCGAGCCTCGTGTTGTTGTGCAGACAAGCGATGCAGATATTCTGGAAGATGGTTTTCGCTGGCGGAAATATGGACAGAAAGTGGTTAAGGGAAACCCTTACCCGAGGAGTTACTACAAGTGCACCAGCTTGAAATGCGCTGTCCGCAAACATGTGGAAAGGGCATCTGATGATCCTAAAGCTGTTATAACAACTTATGAGGGAAAGCACAACCATGATCCACCTTTGGCAAGAAACAGCAACCAAGATGCTGCCGGCATTAGTTCCCCGGGTCTGAGTGGAAATGGTGCTAATGCAGCACAAGACAAACAGATTCAAAACAGGCTGACTTCTTTTGCAAAAGTTTCACAGGGTGCAGCTGAAGGAGAAGATAGAATGCATGCTGGAGAAGTTGGAGGTGTAAAGCTGATGAGAAATAACAGGCAAAGTGATGTTGAAGATATTGAAAGGGAGGGCTCTTGGCAGTGA___TGATAATTTTGTTGTTTGAAAAACAGCTGCAATGCTTTGGGAGTGATGCAGAAGGAAGACCATGAACTGACTTCATAGAATAACTAGTTATGTCAAAGCATTTGCCAGAAGTTATGAGATGTTTTATAATCACGTCATTGGATAGTCAATTCGGAAGATTTCAAATGCTGCGTAAATGTACTATGATGCTTTCTGATGCACCTACGGACATTCTTTCTCCACCTGTGCCTACACAAAAACAGAGATATGCTGCTGCTGAGTTCCCGATTTGAAAGTGCAACAATGACATCACCAGTACTGATTTGAACAATAGGCAAATGTTATAACATGGAGTAAATCCAAAATCACATGTTGTAAAGGTTACATAATTATTAGTGTTGCTTGCATATAATCTCTGAGTATGGGCAGGAGCTTAAATTTAAACTGCTGGGGGAAAATGTGGGGCTATAGACTTGTCCCTGCCATGTGACATT

Fln Alignment:

Contig973___TEESCAPAIEAPSEPQASDSHGEAKERATVVFKPLAKLGTMNPALSSLANLGSFGISHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTFPVHQVXXXXXXXXXXXXXXP-GFNAYYVQQKVSLKSETKQAIESPNPVPQNTEQIQRSLPPIPIADRPSFDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHDGQITEIVYKGEHSHLKPQPTRRLPTGSTQNPNGLDVNGREMESPRGEKNEYFDVNADQSSPGFFADPGGRTERLALTNVSDPSTPARGVNYGNGSPDLSPCLSDDGEGANRADDEDDDEPVSXXXXXXXXXXXXLAPERSSREPRVVVQTSDADILEDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCAVRKHVERASDDPKAVITTYEGKHNHDPPLARNSNQDAAGISSPGLSGNGANAAQDKQIQNRLTSFAKVSQGAAEGEDRMHAGEVGGVKLMRNNRQSDVEDIEREGSWQ
B8LKI1________________TEDSCAPAMEAPPEPQASDNHVEAKERTTVVFKPLAKLGTMNPALSSLANLGSFGISHQQALAQVQAQARAQAQVQSQPVSSLMPVSSSAATFPVHQVSSSAALTTPTSLSSAPGFNAYFVQQKPSLKSETKQTIESPNPVPQNTEQIQRSLPPIPIADRPSFDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHDGQITEIVYKGEHSHLKPQPTRRLPTGSTQHPNGLDVSGREMESPRGEKNEYFDVNADQSSPGFYADPVGRTERLALTNVSDPSTPARGVSYGNGSPELSPCLSDDGEGVNRADDEDDDEPVSKRRKKDKKMKDLLAPERPNREPRVVVQTSDADILEDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCTVRKHVERASDDPKAVITTYEGKHNHDPPVARNSNQDAAGISSAGLSGNGANAAQEKQIQNRLTSFARVSQSAVEGEDRMHVGEVGGVQLMRNNRQSHGEDIEKEGSWQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
272	25		75		0.996473
273	25		75		0.996473
276		75		25	0.996473
619	16		83		0.994512
620		66		33	1.0
621		83	16		0.994512
766	11			88	0.923564
769			88	11	0.923564
818	28		71		1.0
848		25	75		0.996473
849	25			75	0.996473
1738	16		83		0.994512
1739		16	83		0.994512
1740	16		83		0.994512
1741		83		16	0.994512
1742			83	16	0.994512
1755	25		75		0.996473
1756		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain