SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene972

Length: 1292 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene972 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5907	17/20
SustainPine v2.0	sp_v2.0_unigene26131	2/20

Source	Descriptions	Term	Type	Identity
AutoFact	Ankyrin-kinase, putative n=1 Tax=Ricinus communis RepID=B9SV01_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	integrin-linked protein kinase-like protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.112.1	-	0.0	75%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	75%
Blast2go	regulation of signal transduction	GO:0009966	Biological Process	75%
Blast2go	protein serine/threonine/tyrosine kinase activity	GO:0004712	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Integrin-linked protein kinase	IPR016253	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC7

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 310 - 502

Fln protein: PNAPMSVSNPLQIPEYEVNPAELSFPQGAEISKGSYQLAKWNGTRVAVKILNKDYYSDPESIKRFKNELTLLQKVRHPHVVQFVGAVTQNVPMMIIAEYLPNGDLSSYLQKKGRLQPAKAVRIALEIARGMNYLHESKPEAIIHCNLKPRNILRDSGGHWKVTDFGLSQLLKLSSDNVREWHRRPLDDTLRLYMAPEVYKNEAFDRSVDVFSFGLILYEMIEGTPPFHLKSPEEVSRLMALEDKRPAFKLKPKHYPSDLKELIEECWDRNPCVRPIFSAIIVRLDRIRPLCVKQSFWKGTFKFSRRNEF*

Protein Length: 311

Fln nts: TGCCTAATGCACCAATGAGTGTATCAAATCCTCTCCAGATTCCAGAATATGAAGTAAATCCAGCAGAGCTGTCATTTCCACAAGGTGCAGAGATATCAAAGGGTAGCTATCAATTAGCCAAGTGGAACGGGACAAGAGTTGCTGTAAAGATTCTTAACAAGGACTATTATTCTGACCCAGAAAGCATAAAACGTTTCAAGAATGAGTTGACATTGCTACAAAAGGTTCGGCATCCTCATGTGGTTCAGTTTGTGGGTGCTGTCACACAAAATGTTCCTATGATGATCATTGCAGAGTATCTTCCAAACGGAGATTTGAGCAGTTACCTCCAAAAGAAAGGACGTTTACAACCTGCAAAGGCAGTGAGAATTGCTCTTGAGATTGCAAGAGGAATGAATTATCTTCACGAATCCAAACCGGAGGCAATCATCCATTGTAATTTGAAGCCAAGAAATATTTTGCGTGATAGTGGGGGGCATTGGAAAGTGACAGATTTTGGATTGAGTCAATTGTTGAAGTTATCATCAGATAATGTTCGAGAATGGCATCGACGTCCCTTGGATGATACCTTAAGGTTATATATGGCGCCAGAGGTTTACAAAAATGAAGCATTTGATAGAAGTGTGGACGTTTTCTCGTTTGGTCTTATTCTTTATGAGATGATTGAAGGTACCCCACCTTTCCACCTTAAATCACCAGAAGAAGTCTCCAGACTGATGGCTTTGGAGGATAAGAGACCGGCATTCAAACTCAAGCCAAAGCATTATCCAAGTGATCTAAAAGAGTTGATTGAGGAATGTTGGGATAGAAACCCATGTGTCAGGCCAATCTTTTCTGCGATTATTGTGCGTCTAGACAGAATAAGGCCCTTATGTGTCAAGCAGAGCTTTTGGAAGGGAACATTCAAATTTTCCAGGAGAAACGAGTTTTAA___GTGCAGCGTTTCTTATTACTGGCTGGCTTTATCTTACGATTTCTTAAAAAATGAAATGAAAAAGTTAAGTATGTTTCATAATAAATATGGTCAATACAAACAACAACTAGATGTAAGAAGAGTACATCTCGTTGATACTTAGCTAAACCTATGTTTTCATACCTGGGCTAACACCTAGGGAAAATCTCACTTTGATCTATCATTGGAAATAATCCTGTTGTAAATTGAAGTGTTCCTTCTTATTTAGAACCTGGGCATGCACTTGTCTTGCATTTGTACCCAGTTTCTTCATGTCTTCTGTTAAAGATGACAGGCCCTCATAGCTTTTCTCCTATAGGAGAAGAGATATCTCCATTGTAT

Fln Alignment:

Contig972___PNAPMSVSNPLQIPEYEVNPAELSFPQGAEISKGSYQLAKWNGTRVAVKILNKDYYSDPESIKRFKNELTLLQKVRHPHVVQFVGAVTQNVPMMIIAEYLPNGDLSSYLQKKGRLQPAKAVRIALEIARGMNYLHESKPEAIIHCNLKPRNILRDSGGHWKVTDFGLSQLLKLSSDNVREWHRRPLDDTLRLYMAPEVYKNEAFDRSVDVFSFGLILYEMIEGTPPFHLKSPEEVSRLMALEDKRPAFKLKPKHYPSDLKELIEECWDRNPCVRPIFSAIIVRLDRIRPLCVKQSFWKGTFKFSRRNEF
B8LMC7________________PKTPMSVSNPLQIPEYELNPTELSFPQGAETSKGSYQLAKWNGTRVAVKILNKDYYSDPESIKSFKNELTMLQKVRHPHVVQFVGAVTQNVPMMIIAEYLPNGDLSSYLQKKGRLQPAKAVRVALEIARGMNYLHESKPEAIIHCNLKPRNILRDSGGHWKVTDFGLSQLLKLSSDKVREWHPRPLDDTSRLYMAPEVYKNEAFDRSVDAFSFGHILYEMIEGTPPFHPKSPEEVSKMMALEDKRPAFKLKPKHYPSDLKELIQECWDRNPWVRPTFSAVIVRLDRIRPLCVKESFWKGTFKFPKKKSF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
372	20			80	0.995493
373	20			80	0.995493
375		80	20		0.995493
965	16		83		0.994512
966		16	83		0.994512
968			83	16	0.994512
969			83	16	0.994512
1058			75	25	0.996473
1080	25	75			0.996473
1082	25		50	25	0.995533
1108	25			75	0.996473
1112			75	25	0.996473
1127	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain