SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene957

Length: 347 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene957
AGGTCGAGGCCATAGATTATGATAATGTGGGAGCTGTATTAAGGATTCGTGGCAAAAATGTTGTTGAGAATGAGCACGTCAAGATTGGAGCATTTCATACTCTTGAAATTGATGTGCAACGACCCTTTGTGTTAAGAAAGGATGTTTGGGATTCCATGGCTTTGGACACCCTTAAGCAGGCTTGTGATCCTGGAGCAAGTGCTGATCTAGCAGTGATCTTAATGCAAGAAGGTCTAGCAAACCTTCTTCTTGTTGGAAAAAGTGTGACGACAACAAGTGCCAGGATAGAAACATCAATTCCGCGCAAACGTGGTCCAGCTATTGCTGGCTACGAGAAGGCTTTAAAC

Ace file of the UniGene biog3_v1.0_unigene957 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1246	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic release factor 1 (ERF1) family protein n=2 Tax=Arabidopsis RepID=Q9ZT87_ARATH	-	-	71%
FL-Next	tr=Pelota, putative; Ricinus communis (Castor bean).	-	-	79%
Blast2go	eukaryotic release factor 1 family protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	translational termination	GO:0006415	Biological Process	83%
Blast2go	meiosis	GO:0007126	Biological Process	83%
Blast2go	translation release factor activity	GO:0003747	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Translation release factor pelota-like	IPR004405	-	-
Sma3	eRF1 domain 1/Pelota-like	IPR005140	-	-
Sma3	eRF1 domain 2	IPR005141	-	-
Sma3	eRF1 domain 3	IPR005142	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RFU5

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 115 - 378

Fln protein: VEAIDYDNVGAVLRIRGKNVVENEHVKIGAFHTLEIDVQRPFVLRKDVWDSMALDTLKQACDPGASADLAVILMQEGLANLLLVGKSVTTTSARIETSIPRKRGPAIAGYEKALN

Protein Length: 116

Fln nts: AGGTCGAGGCCATAGATTATGATAATGTGGGAGCTGTATTAAGGATTCGTGGCAAAAATGTTGTTGAGAATGAGCACGTCAAGATTGGAGCATTTCATACTCTTGAAATTGATGTGCAACGACCCTTTGTGTTAAGAAAGGATGTTTGGGATTCCATGGCTTTGGACACCCTTAAGCAGGCTTGTGATCCTGGAGCAAGTGCTGATCTAGCAGTGATCTTAATGCAAGAAGGTCTAGCAAACCTTCTTCTTGTTGGAAAAAGTGTGACGACAACAAGTGCCAGGATAGAAACATCAATTCCGCGCAAACGTGGTCCAGCTATTGCTGGCTACGAGAAGGCTTTAAAC

Fln Alignment:

Contig957___VEAIDYDNVGAVLRIRGKNVVENEHVKIGAFHTLEIDVQRPFVLRKDVWDSMALDTLKQACDPGASADLAVILMQEGLANLLLVGKSVTTTSARIETSIPRKRGPAIAGYEKALN
B9RFU5________________VEAIDYDKVGSALRIRGKNVLENEHVKIGAFHTLELELHRPFVLRKEIWDSLALDILSQASDPGASADLAVVLMQEGLAHIFLVGKSMTSTRSRIETSIPRKHGPAIAGYESALN

SNPs (tot: 9)

Position	A %	C %	T %	Probability
120	16	83		0.994512
121	16		83	0.994512
124		83	16	0.994512
183	16	83		0.994512
186	83		16	0.994512
187	83		16	0.994512
308	33		66	0.997452
309	66	33		0.997452
312	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain