SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene937

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene937
AATGTCCTTGTGTTCCTGATATATTATGAGGTGTCCGGAGGGCCTTTCGGTGTTGAGGATTCAGTGAAAGCCGGGGGTCCTCTGTTAGCGCTGTTGGGATTCATTGTTTTCCCCATCATATGGAGTATTCCTGAGGCCCTGGTGACGGCAGAGATGGGGACCATGTTTCCTGAAAATGGTGGGTATGTTGTGTGGGTGTCTTCTGCATTTGGGCCATTTTGGGGATTCCAGCAGGGATGGATGAAGTGGCTGAGTGGGTGATAGATAATGCCCTGTACCCGGTTCTGTTTCTGGACTATCTCAAATCAGCAATACCCGCACTGGGTGGGGGACTGCCTAGGGTCATCGCTGTTCTGCTATTGACAATTGCGCTTACATATATGAACTACAGGGGCCTGACTATTGTGGGACATT

Ace file of the UniGene biog3_v1.0_unigene937 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8425	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9S1L4_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	amino acid	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	90%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	90%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV3

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 258 and 258, Distance to subject end: 313 aas, your sequence is shorter than subject: 138 - 487

Fln protein: NVLVFLIYYEVSGGPFGVEDSVKAGGPLLALLGFIVFPIIWSIPEALVTAEMGTMFPENGGYVVWVSSAFGPFWGFQQGWMKWLSxxIDNALYPVLFLDYLKSAIPALGGGLPRVIAVLLLTIALTYMNYRGLTIVGH

Protein Length: 139

Fln nts: AATGTCCTTGTGTTCCTGATATATTATGAGGTGTCCGGAGGGCCTTTCGGTGTTGAGGATTCAGTGAAAGCCGGGGGTCCTCTGTTAGCGCTGTTGGGATTCATTGTTTTCCCCATCATATGGAGTATTCCTGAGGCCCTGGTGACGGCAGAGATGGGGACCATGTTTCCTGAAAATGGTGGGTATGTTGTGTGGGTGTCTTCTGCATTTGGGCCATTTTGGGGATTCCAGCAGGGATGGATGAAGTGGCTGAGTxxxxxxATAGATAATGCCCTGTACCCGGTTCTGTTTCTGGACTATCTCAAATCAGCAATACCCGCACTGGGTGGGGGACTGCCTAGGGTCATCGCTGTTCTGCTATTGACAATTGCGCTTACATATATGAACTACAGGGGCCTGACTATTGTGGGACATT

Fln Alignment:

Contig937___LVFLIYYEVSGGPFGVEDSVKAGGPLLALLGFIVFPIIWSIPEALVTAEMGTMFPENGGYVVWVSSAFGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALGGGLPRVIAVLLLTIALTYMNYRGLTIVG
A9NVV3________________LIFLIYFEVSGGPFGEETAVKAAGPLLAIAGFLIFPFVWSIPEALVTAELATAYPGNGGYVVWAGTAFGPFWGFLMGWWKWIGGVINNAAYPVLCFDYLKLLLPACGHGPVRDVGILLYTFLLSYLNFTGLSIVG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
410	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain