SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene924

Length: 347 nt

UniGene Fasta

>biog3_v1.0_unigene924
AATGTAGACCACACGTTTTTGGATGGTAGTAATGAAAAAATGAGAGTTCCTAAGGGACTAAAAGAAGATGAACCTTTGCTTTTCAGTCGTGGAAAGAGTGAAAGAAATGCTAGCTGGGATTTTAGTACTGCAGGCAGCCTTGGTACGGGGACAGTTCGCAGTGCAGTAAAGCCTCCATTTCTTGCTGGAAATAGAGAAAGAAAGTTTGAAGGAACATCTAATCAAACTGTTGCGAGGGTTTCATCAGACCGAGTAAATGAATGGCATGCTCTCTCAAGCTCTTCCAATGTATCTCAAGAAACATCTGTAAAATTTGATCATGCAGAAGGCTCTTCTGGAATTACATT

Ace file of the UniGene biog3_v1.0_unigene924

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1441	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.25)	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	38%
Blast2go	map 4 kinase alpha1	-	-	56%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	56%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	56%
Blast2go	response to salt stress	GO:0009651	Biological Process	56%
Blast2go	cytoplasm	GO:0005737	Cellular Component	56%
Blast2go	spindle	GO:0005819	Cellular Component	56%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R397

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 115 - 698

Fln protein: NVDHTFLDGSNEKMRVPKGLKEDEPLLFSRGKSERNASWDFSTAGSLGTGTVRSAVKPPFLAGNRERKFEGTSNQTVARVSSDRVNEWHALSSSSNVSQETSVKFDHAEGSSGIT

Protein Length: 116

Fln nts: AATGTAGACCACACGTTTTTGGATGGTAGTAATGAAAAAATGAGAGTTCCTAAGGGACTAAAAGAAGATGAACCTTTGCTTTTCAGTCGTGGAAAGAGTGAAAGAAATGCTAGCTGGGATTTTAGTACTGCAGGCAGCCTTGGTACGGGGACAGTTCGCAGTGCAGTAAAGCCTCCATTTCTTGCTGGAAATAGAGAAAGAAAGTTTGAAGGAACATCTAATCAAACTGTTGCGAGGGTTTCATCAGACCGAGTAAATGAATGGCATGCTCTCTCAAGCTCTTCCAATGTATCTCAAGAAACATCTGTAAAATTTGATCATGCAGAAGGCTCTTCTGGAATTACATT

Fln Alignment:

Contig924___DHTFLDGSNEKMRVPKGLKEDEPLLFSRGKSERNASWDFSTAG----SLGTGTVRSAVKPPFLAGNRERKFEGTSNQTVARVSSDRVNEWH
D8R397________________EHMYEQDTVEKPKGLKAAKDGESHLLSLTKAMRNASWDFGTGTIQGISQGTGTVRSGLRTPFGFDDRVESFEGDMSPRI----SSRSHDWH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain