SustainPineDB

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Assembly info
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene917

Length: 364 nt

UniGene Fasta

>biog3_v1.0_unigene917
TGGCGCAGGCGCGATCAGGCAGAAGCAGCAGCATTGGCAAGCAGGTGAGCCACCAACAGGCAACGCACCGGCTCAGACAGCGAGTAATCGGAGCAATCAACAAGTTATCAGATCGAGACACATACACGATTGCTTCAGCAGAGCTCGAAGGCGTTGCTCGGAGCTTGAATTCGGATGGCTTTTCCCCCTTCTTGTCATGTCTCTATGACACCGACTCTCAGCAGAAGAGCACCGTGAGGAAAGAATGCGTGAAGCTCTTCGCCACGATGGCTGATGCCCACGGCGATTCGTTGTCGCCCCACCTGTCAAGAATGGTGGGCAATGTTGTCCGTCGCCTGAAGGACCCCGATTCCAATGTCCGCGA

Ace file of the UniGene biog3_v1.0_unigene917

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4042	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Microtubule-associated protein TORTIFOLIA1, putative n=1 Tax=Ricinus communis RepID=B9SP95_RICCO	-	-	52%
FL-Next	sp=Microtubule-associated protein TORTIFOLIA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T041

Fln msg: Distance to subject end: 725 aas, your sequence is shorter than subject: 120 - 864

Fln protein: AQARSGRSSSIGKQVSHQQATHRLRQRVIGAINKLSDRDTYTIASAELEGVARSLNSDGFSPFLSCLYDTDSQQKSTVRKECVKLFATMADAHGDSLSPHLSRMVGNVVRRLKDPDSNVR

Protein Length: 121

Fln nts: TGGCGCAGGCGCGATCAGGCAGAAGCAGCAGCATTGGCAAGCAGGTGAGCCACCAACAGGCAACGCACCGGCTCAGACAGCGAGTAATCGGAGCAATCAACAAGTTATCAGATCGAGACACATACACGATTGCTTCAGCAGAGCTCGAAGGCGTTGCTCGGAGCTTGAATTCGGATGGCTTTTCCCCCTTCTTGTCATGTCTCTATGACACCGACTCTCAGCAGAAGAGCACCGTGAGGAAAGAATGCGTGAAGCTCTTCGCCACGATGGCTGATGCCCACGGCGATTCGTTGTCGCCCCACCTGTCAAGAATGGTGGGCAATGTTGTCCGTCGCCTGAAGGACCCCGATTCCAATGTCCGCGA

Fln Alignment:

Contig917___RSSSIGKQVSHQQATHRLRQRVIGAINKLSDRDTYTIASAELEGVARSLNSDGFSPFLSCLYDTDSQQKSTVRKECVKLFATMADAHGDSLSPHLSRMVGNVVRRLKDPDSNVR
Q9T041________________RSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain