SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene881

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene881
AGAGGATGCTATTTTTAGAGTACTTCCAGGATTGGATGGAAACGAAGATTCTGTTTCTTTCGAGTCTGCAAACTTCCCAAGTTGTTTCTTATATGGGGCAGAGAGTTACCAAGTTGGGCAGGCTGTGGAATTGCGTTGTAAACCTTTGGTAACTGATTTGGCATTTAATCGTGCAACGAGCTTCACATGGAACACAGGATTTGCCAAATACCATCCAATTAGTTTTATTGCTAGAGGCGCAAGGAGAGCTTACCTTCTTGCACCTCTCTTGGCCTATAGAGATGAATCCTACACAGTTTACTTCAACATCACAGCATTAATAATGGAAGCATCTTACTAGACACAGTATCCTCACTCTCAGCTCTTATCGAAGGAAACGCAAAGTTCGATAGGAATATGAAAGTTTTACCTGAAAACTTACATT

Ace file of the UniGene biog3_v1.0_unigene881 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27189	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1680 domain containing protein	-	-	7.0e-21	31%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	uncharacterized protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	58%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1680	IPR012878	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6GU96

Fln msg: your sequence is shorter than subject: 113 - 874

Fln protein: EDAIFRVLPGLDGNEDSVSFESANFPSCFLYGAESYQVGQAVELRCKPLVTDLAFNRATSFTWNTGFAKYHPISFIARGARRAYLLAPLLAYRDESYTVYFNITALIMEASY*

Protein Length: 114

Fln nts: AGAGGATGCTATTTTTAGAGTACTTCCAGGATTGGATGGAAACGAAGATTCTGTTTCTTTCGAGTCTGCAAACTTCCCAAGTTGTTTCTTATATGGGGCAGAGAGTTACCAAGTTGGGCAGGCTGTGGAATTGCGTTGTAAACCTTTGGTAACTGATTTGGCATTTAATCGTGCAACGAGCTTCACATGGAACACAGGATTTGCCAAATACCATCCAATTAGTTTTATTGCTAGAGGCGCAAGGAGAGCTTACCTTCTTGCACCTCTCTTGGCCTATAGAGATGAATCCTACACAGTTTACTTCAACATCACAGCATTAATAATGGAAGCATCTTACTAG___ACACAGTATCCTCACTCTCAGCTCTTATCGAAGGAAACGCAAAGTTCGATAGGAATATGAAAGTTTTACCTGAAAACTTACATT

Fln Alignment:

Contig881___AIFRVLPGLDGNEDSVSFESANFPSCFLYGAESYQVGQAVELRCKPLVTDLAFNRATSFTWNTGFAKYHPISFIXXXXXXXXXXXXXXXXRDESYTVYFNITA
F6GU96________________SLFHLVAGLDGKDGTVSLESKTQKGCFVYSDVNYDSGSAIKLKCKLASSDVVFNQATSFTLKHGISEYHPISFVAKGLRRDYLLAPLLSLRDESYTVYFNIQA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
107	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain