SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene870

Length: 957 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene870 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8165	35/35

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	99%
FL-Next	tr=Tau class glutathione S-transferase; Pinus brutia.	-	-	98%
Blast2go	tau class glutathione s-transferase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutathione transferase.	EC:2.5.1.18	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Glutathione metabolism	00480	79%
Blast2go	Metabolism of xenobiotics by cytochrome P450	00980	79%
Blast2go	Drug metabolism - cytochrome P450	00982	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	glutathione transferase activity	GO:0004364	Molecular Function	0.0	79%
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
802	80		20		0.995493
803	80			20	0.995493
804		60		40	1.0
806	60	40			1.0
878	20	80			0.995493
881	25			75	0.996473
885		75		25	0.996473
891		25		75	0.996473
892		25		75	0.996473
893		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain