SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene860

Length: 402 nt

UniGene Fasta

>biog3_v1.0_unigene860
AATGTAAAAGGAGTTCTGCCGGAGCCCAGTGTCATCTGGTGTCCGGATTGTAATTACTAAATATCAGATTCCTCCCATTCCTCCTCATACATCAGCTCAAGCCGCGATTATCTTCATTTTAGCCTGTAATTCTCATTGTAACTGGCGGATTTTGGCCCCGGTCTTGCGCAAATTTAAATATGAGTTCGAGAGATGCAGACAACGCTCAGCTTCAGGAGTTCTTTGAGCCTGAAAAGAGCGTAAAAACCCGTTAGTTCCTCTTGGGGCCCTTGCAACAGCAGGTGTTCTTACAGCAGGCTTAGTCAGTTTCAGGAATGGGAATTATCAATTGAGTCAAAAATTGATGAGAGCTCGTGTTGTCACGCAAGGTGCTACTGTGGCACTGATGCTTGGTACTGCTCT

Ace file of the UniGene biog3_v1.0_unigene860

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17002	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger family protein n=3 Tax=Picea RepID=Q3ZDI4_PICAB	-	-	2.0e-38	74%
FL-Next	tr=Zinc finger family protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	73%
Blast2go	ring-h2 finger protein atl3i	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Hypoxia induced protein, domain	IPR007667	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q3ZDI4

Fln msg: Separated hits, possible frame ERROR between 272 and 305, STOP codon was not found. Distance to subject end: 5 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 116 - 152

Fln protein: LLNIRFLPFLLIHQLKPRLSSF*PVILIVTGGFWPRSCANLNMSSRDADNAQLQEFFEPEKSVKTR*FLLGPxxxxxxxxxxxxSFRNGNYQLSQKLMRARVVTQGATVALMLGTA

Protein Length: 117

Fln nts: AATGTAAAAGGAGTTCTGCCGGAGCCCAGTGTCATCTGGTGTCCGGATTGTAATTACTAAATATCAGATTCCTCCCATTCCTCCTCATACATCAGCTCAAGCCGCGATTATCTTCATTTTAGCCTGTAATTCTCATTGTAACTGGCGGATTTTGGCCCCGGTCTTGCGCAAATTTAAATATGAGTTCGAGAGATGCAGACAACGCTCAGCTTCAGGAGTTCTTTGAGCCTGAAAAGAGCGTAAAAACCCGTTAGTTCCTCTTGGGGCCCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTTTCAGGAATGGGAATTATCAATTGAGTCAAAAATTGATGAGAGCTCGTGTTGTCACGCAAGGTGCTACTGTGGCACTGATGCTTGGTACTGCTCT

Fln Alignment:

Contig860___FLLIHQLKPRLSSF*PVILIVTGGFWPRSCANLNMSSRDADNAQLQEFFEPEKSVKTR*FLLGPLxxxxxxxxxxxSFRNGNYQLSQKLMRARVVTQGATVALMLGTA
Q3ZDI4________________FLLIHQFKHRFSSFKPAILIITGGFWHRSCANLNMGSRDVDTAQLQELFEPEKSVKNPFVPLGALxxxxxxxxxxxSFRNGNYQLSQKLMRARVVTQGATVALMLGTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain