SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene837

Length: 960 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene837

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23376	18/24
SustainPine v2.0	sp_v2.0_unigene63537	6/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	1.0e-22	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA-binding motif protein 8	IPR008111	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
189	66			16	0.988813
380	20		80		0.995493
381		80		20	0.995493
382			80	20	0.995493
446	25	75			0.996473
449			25	75	0.996473
467		80		20	0.995493
568	16		83		0.994512
573			83	16	0.994512
585		20		80	0.995493
588			83	16	0.994512
746		16		83	0.994512
747	16		83		0.994512
749		83		16	0.994512
792	25		75		0.996473
799		75		25	0.996473
810	16			83	0.994512
812			16	83	0.994512
813			83	16	0.994512
822	16	83			0.994512
823		16		83	0.994512
825			83	16	0.994512
873	25		75		0.996473
874		25		75	0.996473
941		66	33		0.997452
948	33		66		0.997452
949	66	33			0.997452
951			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain