SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene825

Length: 1067 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene825

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1266	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] gb\|AAF87863.1\|AC022520_7 similar to cdc2 protein kinase [Arabidopsis thaliana] gb\|AEE32884.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	probable serine threonine-protein kinase at1g54610-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Gonadotropin-releasing hormone	IPR002012	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Xylan biosynthesis protein IRX15/IRX15L	IPR006514	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 141 aas, your sequence is shorter than subject: 355 - 575

Fln protein: MSLYG*RDTGFT*TRPSKCSEVGRIGHIKDVLQLVPCI*IHGS*PLLALLACPGIKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNGGILKIADFGLATFFHPDQRQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQPYKRCVAETFKDFPPSALALMEVLLAIEPADRGTAASALKSDFFTTKPLACDPSSLPKYPPSKEFDAKIRDKEARRQRAAGGRGRDVAKRPSRESRAIPAPEANAELAISIQKRRLSSQGPSKSKSEKFNPQQEDGAVGFPIEPPRPMHIGIDA

Protein Length: 356

Fln nts: AATGTCGCTTTATGGCTAGAGAGATACAGGTTTTACGTAGACTAGACCATCCAAATGTAGTGAAGTTGGAAGGATTGGTCACATCAAGGATGTCCTGCAGCTTGTACCTTGTATTTGAATACATGGATCATGACCTTTGCTGGCCTTGCTAGCATGTCCTGGTATAAAGTTCACAGAACCGCAGGTGAAATGTTATATGCAACAATTGCTTCGAGGTCTTGATCATTGCCATAGCCGTGGTGTGCTACACCGTGATATCAAGGGTTCAAATCTTTTGATTGACAATGGCGGTATTCTAAAGATAGCTGACTTTGGCCTAGCTACCTTCTTTCACCCGGATCAGAGGCAGCCGTTGACAAGTCGTGTTGTAACACTTTGGTATCGACCTCCGGAACTTTTACTGGGTGCTACAGAGTATGGAGTTGCCGTGGATTTGTGGAGCACAGGTTGCATACTTGCAGAGTTGCTTGCTGGAAAACCTATCATGCCAGGAAGAACAGAGGTAGAACAACTCCACAAAATTTTTAAGTTGTGTGGTTCACCATCTGAAGACTATTGGAAAAAGTCAAAATTGCCACATGCAACTATCTTCAAGCCACAGCAGCCATATAAACGTTGTGTTGCAGAGACGTTTAAAGATTTTCCACCATCGGCTCTGGCACTGATGGAGGTTCTTCTTGCCATAGAACCTGCTGATCGTGGAACTGCCGCTTCAGCATTAAAGAGTGATTTCTTTACCACCAAACCACTCGCTTGTGATCCTTCAAGTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGATGCAAAAATTCGTGATAAGGAGGCAAGAAGGCAAAGAGCAGCGGGAGGAAGAGGGCGTGATGTAGCTAAGCGCCCATCACGAGAATCAAGAGCAATTCCAGCACCAGAAGCAAATGCTGAATTAGCAATTTCCATACAGAAGCGGCGCTTAAGTTCACAAGGGCCTTCCAAAAGCAAGAGTGAGAAATTCAATCCCCAGCAGGAAGATGGTGCTGTGGGATTTCCTATTGAGCCTCCAAGGCCTATGCATATTGGCATTGATGCAG

Fln Alignment:

Contig825___LLALLACPGIKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNGGILKIADFGLATFFHPDQRQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWK-KSKLPHATIFKPQQPYKRCVAETFKDFPPSALALMEVLLAIEPADRGTAASALKSDFFTTKPLACDPSSLPKYPPSKEFDAK
A9NXN0________________LTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRLMKRRVRESFKNFDRHALDLVEKMLTLDPSQRICAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFQTK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
251	20	80			0.995493
252	20		80		0.995493
255	80			20	0.995493
322	20			80	0.995493
325		80	20		0.995493
326		80		20	0.995493
447		20	80		0.995493
448	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain