SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene811

Length: 1138 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene811

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16489	35/35

Source	Descriptions	Term	Type	Identity
AutoFact	palmitoyl protein thioesterase family protein [Arabidopsis thaliana] ref\|NP_850728.1\| palmitoyl protein thioesterase family protein [Arabidopsis thaliana] emb\|CAB87871.1\| palmitoyl-protein thioesterase precursor-like [Arabidopsis thaliana] gb\|AAN13045.1\|	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	palmitoyl protein thioesterase family protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Palmitoyl protein thioesterase	IPR002472	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRL7

Fln msg: your sequence is shorter than subject: 284 - 307

Fln protein: CIVLHGIGDKCKNRGVNHFTELLSNWSGSSGSCIEIGDGSMTSWTMPLEKQAECVCEKVKAMPELKNGYNMVGLSQGNVIGRAVIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICALVDALIKGELYSDFVQEHLAPSGYLKIPTDISDYLKGCKFLPKLNNEKPDERNSTYKERFSSLKNLVLIMFEHDTVLIPRETSWFGYYPDGNFSVILPVNETALYKEDWIGLKTLDDAGKVKYFSVPGNHLGINHSDMLKYVVPYLEEDAVIREMAQQPVLNS*

Protein Length: 285

Fln nts: AATGTATCGTTTTGCATGGCATTGGTGACAAGTGCAAAAACAGAGGTGTTAACCACTTCACTGAGCTACTGAGCAATTGGTCTGGATCTTCAGGATCATGCATAGAAATTGGAGACGGTTCAATGACGTCCTGGACTATGCCTCTAGAGAAGCAGGCTGAATGTGTGTGCGAGAAGGTGAAAGCCATGCCAGAGTTGAAGAATGGGTACAACATGGTTGGTCTATCCCAGGGCAATGTGATAGGTCGTGCGGTCATTGAATTTTGTGATGGAGGGCCTCCTGTTTACAACATGATATCATTAGGGGGGCCACATGCTGGAACTGCTTCTGTACCTCTTTGTGGGACATCATTTATCTGTGCGCTTGTCGATGCTTTAATTAAGGGCGAACTATATTCTGATTTTGTGCAGGAACATCTAGCTCCGAGTGGTTATCTAAAAATACCAACGGATATATCTGATTATTTAAAAGGTTGTAAGTTTCTACCAAAGCTTAACAATGAAAAGCCAGATGAGCGAAATTCCACATACAAGGAGCGCTTCAGTAGCCTTAAAAACTTGGTTCTAATTATGTTTGAGCACGATACTGTTTTGATACCACGCGAGACATCATGGTTTGGATATTATCCTGATGGCAATTTCAGTGTGATATTGCCTGTAAATGAGACTGCTCTGTATAAGGAAGATTGGATTGGCTTGAAGACCTTGGATGATGCGGGAAAAGTGAAATACTTCAGTGTACCTGGGAATCACCTTGGTATCAATCATAGTGACATGCTCAAGTACGTTGTTCCCTACTTAGAAGAAGATGCTGTTATCCGTGAAATGGCTCAACAGCCAGTCCTGAATTCATAA___AATGTTTGCTGGAGAGAAGGCCATACAATTCGTTAGTAGTTTTTCTTGCAATTTATGAAAGAACCATGTAGTAAATTGTCAATTGTGAAAGCTTCTCTGTAATATTACAGCATAGTATTCTGGATGGCTGACTACATCTACAAACTTACATGGCATCAAGAATATCTGTTACGTATGAAACTTCAAAGATTGTTATCGCGGTATATTATAATGAATTGTATACCTCAACCTCACTTTTACTTGAACAAGTGTGAAAGAGATGATCCATCTCTTCATATTACATT

Fln Alignment:

Contig811___IVLHGIGDKCKNRGVNHFTELLSNWSGSSGSCIEIGDGSMTSWTMPLEKQAECVCEKVKAMPELKNGYNMVGLSQGNVIGRAVIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICALVDALIKGELYSDFVQEHLAPSGYLKIPTDISDYLKGCKFLPKLNNEKPDERNSTYKERFSSLKNLVLIMFEHDTVLIPRETSWFGYYPDGNFSVILPVNETALYKEDWIGLKTLDDAGKVKYFSVPGNHLGINHSDMLKYVVPYLEEDAVIREMAQQPVLNS
A9NRL7________________IVLHGIGDKCKNKGVSHFTELLSNWSGSSGSCIEIGDGYMTSWTMPLEKQAEIVCEQVKAMPDLEDGYNIVGLSQGNVIGRGIIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICELVDALIKGELYSDFVQEHLAPSGYLKIPTDISKYLKGCRFLPKLNNELPDERNSTYKERFSSLKNLILIMFEHDTVLIPRETAWFGYYPDGNFSVILPANETALYKEDWIGLKTLDDAGRVKYISVPGNHLGITPSDMLKHVVPYLEEDAVIREMAQQLVPNA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
569	25			75	0.996473
571	75		25		0.996473
606	20		80		0.995493
608		80		20	0.995493
609	80		20		0.995493
613	14			85	0.993533
614			85	14	0.993533
787	10		90		0.90298
863	12		87		0.992554
1002	66			33	0.997452
1003		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain