SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene788

Length: 295 nt

UniGene Fasta

>biog3_v1.0_unigene788
CATTGTTCGTGATGAGGAGGTTGATCCACTTCCTCCTTTATTCAAAGCTGCCATTCGCCGATTGGTGAGATGGCACGTTTTGCCACCATCATGCATCCCTGATAGTTGCATTGTTAATATTTACGATGAAAGTGACTGCATACCACCTCATATTGATCATCATGATTTTGTTCGGCCTTTTTGTACGGTATCACTTCTCAGTGAATGCAACATTATCTTTGGTTCAAACTTGAAGATATTGGGACCAGGTGAATTTGTTGGTTCCACTGCAATACCATTGCCTGTGGGGTCAGTT

Ace file of the UniGene biog3_v1.0_unigene788

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene556	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AAD20129.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAQ65186.1\| At2g17970 [Arabidopsis thaliana] dbj\|BAD43754.1\| hypothetical protein [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	2-oxoglutarate and fe -dependent oxygenase-like protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	70%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLT0

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 98 - 496

Fln protein: IVRDEEVDPLPPLFKAAIRRLVRWHVLPPSCIPDSCIVNIYDESDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFVGSTAIPLPVGSV

Protein Length: 99

Fln nts: CATTGTTCGTGATGAGGAGGTTGATCCACTTCCTCCTTTATTCAAAGCTGCCATTCGCCGATTGGTGAGATGGCACGTTTTGCCACCATCATGCATCCCTGATAGTTGCATTGTTAATATTTACGATGAAAGTGACTGCATACCACCTCATATTGATCATCATGATTTTGTTCGGCCTTTTTGTACGGTATCACTTCTCAGTGAATGCAACATTATCTTTGGTTCAAACTTGAAGATATTGGGACCAGGTGAATTTGTTGGTTCCACTGCAATACCATTGCCTGTGGGGTCAGTT

Fln Alignment:

Contig788___IVRDEEVDPLPPLFKAAIRRLVRWHVLPPSCIPDSCIVNIYDESDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFVGSTAIPLPVGSV
B8LLT0________________IVRDEEVDPLPPLFKAAIRRMVRWHVLPPSCIPDSCIVNIYDEGDCIPPHIDHHDFVRPFCTVSLLSECNIIFGSNLKILGPGEFAGSTAIPLPMGSV

SNPs (tot: 4)

Position	A %	C %	T %	Probability
46	75		25	0.996473
48		75	25	0.996473
197	20		80	0.995493
201		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain